BtaINT0114795 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17640685-17641229:+
Coord C1 exon
chr7:17640685-17640853
Coord A exon
chr7:17640854-17641046
Coord C2 exon
chr7:17641047-17641229
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGG
5' ss Score
4.73
3' ss Seq
ACTCCCACCCCCCCATGCAGCTG
3' ss Score
7.88
Exon sequences
Seq C1 exon
CATCCAAGAATTCCGGCTGTCAGGGTGGCTGGCCCAGCAGGAGGACACGCACCGCATCGTGCTCTACCAAACAGACACATCGCTGACGCCCTGGACTGTGCGATGCCTGCGTCAGGCCGACTGCATCCTCATCGTGGGGCTGGGCGACCAGGAGCCCACACTTGGCCAG
Seq A exon
GTCCGGAGACCAGGCACAGTGACCCCTATCCCTGGGATCCCGCCCCAGGCCCTTGGGTGCCTGTGCCGGGCCATGTGCACCTTCACCATTGGGGCTAGGTGGCCAGGAACCCAGGGGGCCAGCTGTGGGGGGCGAGGAGGAAACCACCGGTGAGAGTGACTTCAGTCCTCCTCACTCCCACCCCCCCATGCAG
Seq C2 exon
CTGGAGCAGATGCTGGAGAACACGGCAGTGCGCGCCCTCAAGCAGCTGGTTCTGCTGCACCGCGAGGAGGGCGCAGGCCCCACACGCACTGTGGAGTGGCTCAACATGCGCAGCTGGTGCTCGGGACACCTGCATCTGCGCTGTCCGCGCCGCCTCTTCTCACGCCGCAGCCCGGCCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCGTGCTCTACCAAACA
R:
CAGATGCAGGTGTCCCGAG
Band lengths:
255-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]