MmuINT0128843 @ mm10
Intron Retention
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103582739-103586809:+
Coord C1 exon
chr5:103582739-103582776
Coord A exon
chr5:103582777-103586705
Coord C2 exon
chr5:103586706-103586809
Length
3929 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AAGTCTGTTTGTTGGCATAGCTT
3' ss Score
2.92
Exon sequences
Seq C1 exon
TCAGTGAGCAGCGGAGAAGGAAAAGTAGACCTTGCAAG
Seq A exon
GTAAAGCACGTGCGAGACGCTCTGTCCTTTTATCTTACGCAATGATTATTTCTGTTTCCAATAAAACGTTAATTAAATTATGGAGTGAAAATATAGATAAGTCCTGTTGTTGTTGTTATTTGAGACAAGACATAGTTCTGATTGGCCTAGAACTTGCTATGTAGACCAGATTGGCCTCAAACTAGCAAAGATCTACCTCTGTCTCCTGGAATTCTGGGATTCAAGGTGTGTGCCTTGAATATTATTTTCCAAGATGTGTTCCTGGTACATTCTCTTGACATCTTTATACTATACCTGTTGCTCAAAAACACAAAACAAAAATAAACAAGAAAGAAAGAAACGAGTCTAAAAGAAAGTGTACCAGAAATGGTGATTTTTCTGCTAAGACTATGGGTGGATTTTTGGGTTGGTTTGGTTTAACTTTTGCCTGTTTTTCTGTACTTTCAAATTTTTATGTTTTCATTTCTAAGAAAATGAAGCCAGGGTCAGCAAGATGGCTCAGTGACTAAAGGGGCTTGCCCCAAAGCCTGAAGACCCACGTTCACTCCCTAGGACCCACATGTTTGTGAACTGTGGCATGTGTGCAGATACACATCAAATAGTTAAATGTAATAAAAATATTTCAAATAATAGGAAACCAAGGATGTTAGGAAGTTGTTTTTTAGTTTTTATCATGCTTTTAAGAAAAGGTCTCACTGTGTAAGCCCCAGCTAACCTGGAACTTGTTATGTAGACCGGGCTCGACTTAAACTCATAGAGATCTGCCATTCTCTGCCTCCCTTGTATTAGATTAAAGGCATTCACCACCACACTTGATCTAAATTCCTTTAAACACCACAAAACAATTCTCTCTTTGAAAATAGTTTCCAGAGGCTGGAGAGATGGCTCTGATATTAAGGGCACTGGCTCCTCCTCCAGAAGATCCTGGTTCAGTTTCCAGCAACCACACAGCAGCTCGCACATGGCTGTAACTCCAGCTCTAAGAGGATCGGACACCCTCATCACAGGCATGCACACAAGCAAAACACCAAGGCACATAAAAAATTATTATTATTATTATTATTATTTAAAAAGAAGAAGAAAGAAAAGAGTTTGTGGAACCTGGTGAGCCAGTGGTAGCATACACCTTTATTCCCTGCACTCCAGAGGCTGGTGGATCTCTGTGAGTTCAAGGCCAACCTGATCTACAGAACAAGTTCCAGCACATAGTTTCTAGCTTAAATAAGAATTTTTTAATATGTCAAAAAACATTTTACATGTGTATATATACACATATTTATAGTTTAGTAAATGATTAAACATAAATTTCATATCTGATGAGGTTATTTGTATTTTTCTAGAAAGACAGTATTAGAATTTTTACTAAACTAGAAAAGAAAAAAAACATATTAATAAAGTCATGAGGACCTAGAGAGATGGCTCAGCAGTTAAGAGCACTGGGGGCTTTTCCAGAGAACCTGGGCTTGGTTCTCAGCAAACCCATCCAGCATTTCACAGCTGCCATAACTTAGGGGAGTAACCTCCTCTTCCTGCCTCCATAGACACACATAGTCTTTTTGTCAAATGAAGTAATGAAAACAACTTTATACCTACTCATCAGCAGACATCCGAAAAATAGAGTATACCTTGTTGGACAGACTAGGAAGAAAAGGATAATAAACAAGTGCAGTCTCCCAGGAAGACAGTGAAAATCACTGGGGCCCCTTTTGCACATTACTGATTCTTGAATATGCTTAACTTTGTTTTAATGCCGTTAAAACCATGAAAAAACGTGGTACCCTTCAACCTACCAATATGATTTTAAAGACTTTACTCCAGGGCCTATAAGAGAATATTCTTCTAGAATCATGGTGGCAAAATAATTGCAACATGTTTGCAGCAGAAGACACCATAAAAGAAATGGTAAAGTCAGAGGCCAAGGTGTACTGTGAAATACCACAGAAAACATGTCTCTGTAAGACAGTGTATGTCCTGGAAGGCAAAATCAATTCTCATAGACAGTAAAGAGATGGCTCAGCAGTTAAGACTATATACACTGCTCTTCCAGAAGACCCAAGTTCAATTCCAAGCACCAGTGTGGTGTAGATTATAACTGCTTATAATTCTCCCTCCAGGATGGACACACAGGTGCATACACACACACACACACACACACACACACACACACACACACACACACACAAAACCTTGCAGAAGCAGAACTCAGCAAGTGTGAAATACAGTAGTCCACAGTGAGTTGAAGCAGGAAAATATTCCCACAATAAAACCAACACAGGAGTCTGGATGGTTCAGCTCAAAGCCTGAATCGGTTCCTAGTTAGTTGGTTCCTTGGGTATAAGGAAGTCACAACCATATGTATCTACGCTTCCAAATTACCTGCTGCTGTCTTCTGACCTCTATAAGCAGCAGGCTGGTGCCCACTCAGTCACATAAATAGAAAAACAACCTATGCCCGTTTTTGACATTTGGAGAGCATCCGTGTGTGCTTTAATGGTGTGCACTGGTGACCTCAGACAGACAACTCTGCCTGTTCCCCTGACTGTCAGAAAGTGAGAATCAAGATTAACCTAGTCCTGTTTACCTCACCTACACCTGAACACTAATGTGCTGCCTAGGCTTCCCTTCCAACCACTTACCTCACCAAGGATGATCTGTGGATTAGCTTTCCATAGCTACAACGAAGTATCTGGAATAAATTACGCTCACGGAGGAAAGGTTCCGGGGACCATGATGTCATTGGTTTCTGTTGATCTTGCTTGGCCCCTTTGCTCCTCTGTGACCTGAGTTTGAGCCTTAGAACCCACATTAAAATAAAGCTGAGAGTGATGCTCAGTGCTTGCAACCGAGCACCGAGGAAGTAGAACCAGGCAGACCCCTGAGGTTAGTAACTGGCCAGCCTTGAATGTTTGGCAGGTTCCAAGATTTTGAGATACCCCGTCTCGGAAAAGAATAAAAAGAAGGCAGGTGCCACCTGAGAAGTAGTTCCCGTTGTAGGTCCTTGCTCGTGCACACACAAGTTCATGCATCCCCATCCCCTCCCACGTGTGCACATAGACCCCTGCTCCTGCACATACAAGTGCTTGCAGCCCTCATACACCTACGCACACAAGTGAAAGAATGAGTTAGATGCTGGTAAGCCTATGACATCCATGTTGACACAAAACCATCCCCAAGAGACTCCTTCAGTCTAAGATTCAGAGACCTGGAGTCTGTCTCCAACTAAAACTGCTACTGTGCACTTCACTTTATTTAACATCTACCATGATTTTAAGAGTTATGGAGGGGCTGGAGAGATGGCTTGGCGGTTAAGAGCACTGGCTGCTCTTCCGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCTTGGCCATCCATAATGGAATACCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATAAATAAAATAAATCTTTATTTAAAAAAAAAGAGTTATGGATTGTATCCACACAAGGTCTTGCTATTTTCCCAGGCTGGTGTCCAACTCCAAGGTTCAGCTGATCCTCCTGCCTCAGCCACCAGAGGAGCTAATAGCATAGTCATGTGCTACCATACCCAATCTGAACTTGATTTTTTTTTCAATCAAGAGAGTTTAATTTTTCCATGTATCTATGTACTGTGTGTGAGACAGAGAGAGACAGAGAAGTGCATGTTGACACACATGCTGCTTTGCAAGTACATTGGTCAGAGAGCAACTATAACAGTTCTTTATCTTCCCCGTGAGTCCCAGGGATGAAACTGGGACATCAGACCTGATGGCACTCAGACTGAGCCACCTCACCAGCTCAGACAGCGTAACAGTATCATAGTTAACTATAGAGAAAACAAATAACTTGAATCATGATATTTAAAATTATGCTGGAGACAAAAATATTTCAAGTCTGTTTGTTGGCATAG
Seq C2 exon
CTTAACTGCAGCATCACAAGAAGAGAAGCCCATCGAAGAGGACGCCACGCAGGAAAGCAGAAACTCGACAACGGAGACAACAGACGGTGAAGATTCCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573:ENSMUST00000048957:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types