RnoINT0119991 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7701520-7704898:-
Coord C1 exon
chr14:7704861-7704898
Coord A exon
chr14:7701624-7704860
Coord C2 exon
chr14:7701520-7701623
Length
3237 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AAGTATGTTTGTTGGCATAGCTT
3' ss Score
2.66
Exon sequences
Seq C1 exon
TCAGTGAACGGCGGGGGAGGAAAAGCATGCTTTGCAAG
Seq A exon
GTAAAGCGTGTGCGAGATGGATGCTCTGTCCTTTTATCTTACGGAATGATTATTTTTGTTTCCAATAAAACATTAATTAAATTATAGAGCAGTGGGTAAATATAGATAAGTCTTTTTTTTTCTTTTTTCTTTATTTTTCTTTTTTTTTTTTAATGAGACAAGACATAATTCTAATTGGACTAGAACTTGCTATGTAGACCAAGCTGGCCTCAAACTCACAGAGATCTACCTCTGCCTCCCAGAGTGCTGGGATTCAAGGTGTGCACCACCACACCCAACCTGAATATTATTTTCTAAGTGTGTTCTAGGTATAGTCAGTCTCTTGACATCTTTTTCCTATACCAGTTGTTCAAAAAGACAAAACCGAAAAAACAAGAAAGAAATGAATGGGTCTGAAAGAAAATGTGCCCAAATGGTGATTCTTCTGGGTTTTTTTTTGTTTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTTTGTCTGTTTTTTCGTACTTTAAACTTTTTTGTTTTTTATTACTAAGAAAATGAAACCAGGATCAGCAAGATGGCTCACTGGATGAAAGGGCTTGCCCCAAAACCTGATGACCTGAGTTTAGTTCCTAGGACCCACATGTTTGTGCACTGTTAAATAGTTAAATACAATGCAATAATAATATTTCAAATAATGTGAAGCCAAGGATGTTAGGAAGTTTTTATTTTTTATCTTGCTTTTAAGAGAAGGTCTCACTATGTAAGCCCCAGCTAGCCTGAAACTTGTCATGGAGACCAGAATGAGACCAGAAACTCACAGAGGTCTGCCATTCTCTGCCTCCCTGGTGTTGGGATTAAAGGCATTCATCACCATACTTGATCTAAATCCCTTTAAACACCACAAAAAAAAAAAAAAAAAAAAAAATCTCTCTTTGAAAATAGTTCCTAAGTAAGGGCTGGAGAGACCGCTCAGAGCGCACTGGCTGCTCCTCCAGAGGATCCTGCTTCAATTCCCAGCAACCACACAGCAGCTCACACGTGTGTATAACTCCACTTCCGGAGGGTCTGACACCCTCAACCCAGAGATACCACAAGCAAAATACCAATGCACATAAAAAAAAATAAATAATATAAAAAGAAGAAAAGGAAGAAGGAAATAATAGTTTCTGGCGCCCGTCGAACCAGCACAGGGTTCTGGATGGTTCAGCCAAAGGCTAGGGTTGATTCCTAGCATCCCCAAAGCAGTTGACACCTATGTGTGACTACACTTCCACATTATCTGCTGTCTTCTGACCTCCACAGCAGCAGGCGCGTGCCTGGCGCACACAGACACAGGCTACACTCAGACCTAAACAGAACATAAGTAGACCCTATGCCCCGTCTGTGACATTTGGAGAGCATCAGTCTGTGCTTTAGTGGTGCACTGGACAGCTCTGCTGGTCTCCCTGACCATCACAAGGTGAGAAACAACGTTTTACCCAGTCCTGTTTCCCTCACCTACGTCTGAACACTAATGTTCAGCCTAGGTTTCTTTTTCTCACCACTTACCTCACCAAGGGCGATCTATGGATTAGCTTTCCATAGCTACAACAAACTATGTGGAATAAATTGCACTCAGGGTGGAAAGGTGCGGAGGGGCCATGCCATCACAGGTTTCTGTTGATCTTGCTTGGCCCTGTTGCTCCTCCGTGACAGGGTGGACTATCACGATACACAGTGTGTGGGGCAAAGCTACCCTGGTGGTGACAGGAAGTGAAGAGGCCAAGGGGAGCTGAGGTCCCTCGAGCCCCTTCAGGAGCACATTTCCAGCAACTCACTGAGGTCCTAGCTCCTGAAGGCCCCACCAGACCCCATACACTGTTGGCCGTGGACCAAGCCTTCAGCTCATGGGGATAGACTTAAGATTCAAATCCTAGCAGATGGCATCTTGTGTGTAGCCCAGAACAATGAGAACTTGAGCTAAGCTCTCAACCTACAGTTGTAGCCACAGACTGTGTCCACATGCACACATACACACGTATACACACACACACACACAAATTCTCTCTCCCTCTCTCCCCACCTTCCCCTGCCCAATGTAGTAACAGAAGCTTCTTTTTAAAAGTGAATGGGAGGGCTGAGGAGATAGACAGCCCTGTGAGTAAAGTACTGTGTTTTCAGGCATGAGAACCAGAGTTTGAGCCTTAGAACCCACATTAAAATAAAGCTGAGAGCCGTGCTCTGTTCTTGTAACCAAGCACTGAGGAGGTAGAAACAGGTGCTTACTGACTGGCCAGCCTCGAATACTTGATACTTGGCCAGTTCCAAGAACTTGAGATATCTCAAAAAAAAAAAAAAGTGTACTGAGAAGCAGTTCCCAAGGTAGGTCCCTGCTCTAGCACACGCAAGTGCATGCATCCCCCACACATATGCACACTGATACCTGCTCCTGCACACACAGCTGCATGCATCCCTCACATATATATGCACACACATGGAAGGATGAGTTAGGTATCAATAATGCTGTGACATCCGTGTTGGCACAGAACCGTCCCCAGGGAGGCTCCTTCAGTCTAAGATTCAAAGAGGTGGAGTCTGTCTGTCTTCAACCAAGGCTGCTGCCGCTCACTCCACCTGCTCCTTTAACACCTACCATGGTTTTAGGACTTAGGGACCTTGCTTAGATTTAGAGGTGAGAGTGTGTGGTGTGAGTGTGTGTGTATGTGATGTGAGTGTGTGAATGTGTGTGGTATGAGTGTGTGAGTGAGTGTGAGCGTGTGTGTGTGGTGTGTATGTGATGTGAGTGTGTGAATGTGTGTGGTATGAGTGTGAGTGAGTGTGAGCGTGTGTGTGTGGTGTGTATGTGTGCGGTATGATTGTGTGTGTGAGTGTGAGCATGTGTGGTATGTATATGTGTAGTATGAGTGTGTGTGTGTGGTGTGAGAGTGTGTGTGTGTGGTGTGAGTGTGTGTGTGTGAGTGTGTGTGTGAGTGAGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTTCACACACATACTGCATTGCAAGTATATTGGTCAGGGAGCAACTGTGGCAGCTCTTTTCCTTCTATGTGACGAGCCGCAGGGACGAACCCGGGTCATCAGACATGACGGCACCTTTGCCCACTGAGCCATCTCACCAGCTCAGGAAGTATAACAAGATTGTAGTTAACTATAGCAAAAATAAATAAGTGACTTTAATCGTGATATTTAAAATTATGCTGGAGACAAAAATATTTCAAGTATGTTTGTTGGCATAG
Seq C2 exon
CTTAATCCAGGCATCCCAAGAAGAGAAGCCCGTCAAAGAGGAAGCCACGCAGGAAAGCAGAGAGTCGACAACGGAGACAACAGACCGTGAGGATTCCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]