MmuINT0142237 @ mm9
Intron Retention
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60032318-60034705:-
Coord C1 exon
chr14:60034536-60034705
Coord A exon
chr14:60032517-60034535
Coord C2 exon
chr14:60032318-60032516
Length
2019 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CACTATCTGTTTTATTTCAGGAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
CATTTATGAATGCAACCTGCTCTGCAAGTGTAACAAACAGATGTGTCAAAACCGAGTTATCCAGCATGGTGTCCGGGTGAGGCTACAGGTGTTCAAAAGTGAGAAGAAGGGCTGGGGAGTACGCTGCCTGGATGACATTGACAAAGGGACATTTGTGTGCATTTATTCAG
Seq A exon
GTAAAGCAAAGATTTGATTTTTTAAAAATGTCTTGTAAGTAGTATATATATGAATATAAATTGTCCTAATCAGAGACATTGGCATCATTTAGCCAGGTGCAGAACAAGAAGATGTAGGGCAGCGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCATCCGTAATGACATCTGATGCCCTCTGGTGTGTCTAAAGACAGCTACAGTGTACTTACATAAAATAATAAATAAATCTAAAAAAAAAAAAAAAACATGTAGGGGCAGCACAAAAGGAGACAAGTGACTGGACCAAGGGTCCAGAAGGGGCTGAGATGCCATAAGGTACCAAGCGCTTCAGAAAGGAAAGGTTCTATTTCACCAGGGCTTCAGACTTAAACAAACGGCACATTGTCTCCACAGCTACAGATACTCTGGAGTAAGGGAAGAAAACTTCTAAATAAAAAAACCTAATGACAGTTGGGCTGAAGAGATGACTCAGCAGTTAAGAGTGCTGACTGCTTTTCCAAAGGTCTTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTACTCATATAAATAAAATAAATAAATCTTAAAAAGCAAACAAACAAAAAACCTAATGACCCACTTACTAAGGTAAAAGCAATCAAACAAAAACTCCTTACTATTCTGAGCTGACTAGAATGTCACAAGTTAGTACTGTAATGTTGATTCAGACAGTAACCTTAAACATCTCGCATAGTTTCAGGGGCTCCAGAAAAGCTGATCATGCTTGAATCTGTCACATACCACTCACATACACATATACTACCCAGCCTGCCTAGACAGTCTTCCTGTTTCTCAGACTAGCCCTTTAGTGAAGCTGCCTGCTCACTCACAGTGGTGTCCAGAGAGCACCATTGGCAGTCTAAGCAGAGCTAGCACAGGACTTGAGGCTGACCTAGAAAGATGAGTGGCAATAACTAGCCACCAATTCTAGCTTGATAAGTACAATTGACTCTTAAAAGAAGATGTGGGAGCGACAGCGACGCAAGATGGCAGCCACCACAGGCTAGGGAGTAAAAGTCCCTCGAAATTTTCGACTGTTGGAAGAGCTGGAAGAAGGACAGAGGGGAGTAGGCGACGGCACAGTGAGCTGGGGTCTGGAGGACGACGAGGACATGACACAAGGTGGACAGGCATGATAATTGGACCTCCACCAACAATCTATGAAAACTGAATATACAGCCTTAAGATAGAGTGTGGGCCTAAGTACCCAGAGGCACCTGGTCTGTAAGATTCGTAACAAGAGTCAATATGAGCGGCGTGAGCAGTTCGAATGGACTCAGGTTTCAGTGTTGCTCCTCAGACCCCCTGCAGGGACCGGGAGGAGCTCTGTGTCCCCATGTTTGCAGATCATCTGCAGATCCGTGGGCCTGGCCTCCTGGCTCACTGCCACACTCCCCACTCTGTTCAGGACCACTAAATGTTGAAATGTGGATGCATACTGAAATAAAGGCAATCTGTTGTGTTGCAAAAAAAAAAAAAGAAGATGTGACCGATTTTAATAGTAAACTGAATTTGAGCATAATAGTAAATCAAGGTCACATTTTAAATAGGTCATTTTTTAGAAGAGTTTAAAATTTTAAACTTAAAAAAACAAGTCTTGTCTTGAGTGCTTTTTTGATTTTACATTACTGTGGATCTTTGTAAAATACCAAAATGGACTGGTGCTTCTTTCATATAGCTCATATTTATTATGAACATAAGACGGCCGCCCATTTGTCTTCTTTTAGTATCTTGGAATGGTTTTCTTTGATGTATTCTAGAATTTTTAGGGTGGGTTCGTCTCTCTAGAAACAGGGCGCTCCTGGCCCAGAGAAGACAGATGCCTACTTGTTGGTAGCTTCCTGTTTTGAACACTATCTGTTTTATTTCAG
Seq C2 exon
GAAGGTTACTGCGCAGAGCCACTCCTGAGAAAACTAATATAGGTGAAAATGGAAGAGAGCAACAGCACATTGTGAAAAATTCATTTTCCAAAAAGAGGAAACTAGAAGTTGTGTGTTCAGATTGTGACGCACACTGTGACAGTCCTAAGGCTGAGGACTGCCCTCCCAAGCTTAGTGGTGATCTCAAAGAGCCCGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-Setdb2:NM_001081024:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(15.8=31.0),PF0085623=SET=PU(6.5=34.5)
A:
NA
C2:
PF0085623=SET=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: