RnoINT0133873 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39722502-39723967:-
Coord C1 exon
chr15:39723798-39723967
Coord A exon
chr15:39722701-39723797
Coord C2 exon
chr15:39722502-39722700
Length
1097 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACACTATCTGTTTATTTCAGGAA
3' ss Score
9.89
Exon sequences
Seq C1 exon
CATTTATGAATGCAACCTGTTCTGCAAGTGTAACCGACAGATGTGTCAAAACCGCGTCATCCAGCATGGCCCCCGGGTGAGGCTGCAGGTGTTCAAAAGTGAGAAGAAGGGCTGGGGAGTGCGCTGCCTGGATGACATTGACAAAGGGACATTTGTGTGCATTTATTCAG
Seq A exon
GTAAAGCAAAGATTTGCTTTTTAAAGATTTTTTTCCTATAAGTAGGGTCTATATACATCTGTATTTAAATTGTCCTAGTCAGAGCCATCCACATCATTTAGCCAGGTGCAGAACCACAAGATGTAGGGGCAGTACAAAGGGAGACAGGCAACTGGACCTTGGCTCCAGAAGGGCTGAGATGCCATAAGGTCCGAGGTGCTTCAGAAAGGAAAGGTCCTACTTCCCCAGGGCTTGAGACTCAAGCAGCACATTGTCTCCACAGCTACAGGTGCTATGCAGTAAGGGAAGAGAACTTCTAAATACAAAGTCCCAGTGACCCACCTACCCAGGTAAAAGCAATCAGGCTAAAGCTCCTTAGTATTTGGAACTGACTAGAAGTTCACAAGTCAGTTTGTGATGTTGAGTCAAACAGTAACGTTAAGCATCTCACTTAGTTCAGGGACTTCAGAATAGATGGTCATGCTTGAATCTGTCACATACCACTTACATACACATATGCTACCCAGCCTGCCTAGCATTCTTCCTGTTACGCAGACTAGCCCTCTAGTGAAGCTGTCTGCTTACTCTAAGTGGTGTCCAGGAAGCGTCACTGGCAGTCTCTGCAGAGCTGGAACGTGGCCTGAGACTGACCTAGAAGATGAGTGGTAATACCTAGCCACCAATTCTAGTCTGATAAGTATAATTTGACTCTTGAAAGAAGATGCGTCAATGAGACAGATTTTAATATTAAACTGAGTTTGAGCATAATAGTAGGTCAAGGTCACAAATTTTAAATAGGTCATTTTTGATAAGAGTTTAAAATTTCAAACTTAAACCAGTCTTGTCTAGAGTGCCTTTTGTTTTCGTGTTGCTGTGGATCTTTATAAAATATCAGAGTGGACTGGCCCTTCTTTCATATAACTCATCTCTACTATGAATATGAGGCTCCCGTTGGCCTTGATTTTTTCCTTTTAGTTTCATGGTATGGTTTTCTTTGATGTATTCTAGAATTTGTAGGGTGGGTTTATCTCTCTAGAAACAAGGTGCTCCTAGTGCAGAGAAGACAGATGCCTGCTTGTTGGTAGTTTCCTGTTTTGAACACTATCTGTTTATTTCAG
Seq C2 exon
GAAGGTTACTGAGCAGAGCCACTCCTGAGAAAACTAACATTGGTGAAAGTGAAAGTGAGCAGCAGCACACCGTGAAAAATTCATTCTCTAAAAAGAGGAAAATAGAAGTTGTATGTTCAGATCGTCAAACACACTGTGAAAGTCCTAAAACTGAGGGATGTCCTCCTAAGTTTAGCAGTGATCTCGAAGAGCCCGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(15.8=31.0),PF0085623=SET=PU(90.9=34.5)
A:
NA
C2:
PF0085623=SET=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCTGTTCTGCAAGTGT
R:
CAACGGGCTCTTCGAGATCAC
Band lengths:
358-1455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]