MmuINT0147243 @ mm10
Intron Retention
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14791067-14794057:+
Coord C1 exon
chr14:14791067-14791164
Coord A exon
chr14:14791165-14793949
Coord C2 exon
chr14:14793950-14794057
Length
2785 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
AAAGTGTATTTGTTCTTCAGTAT
3' ss Score
4.74
Exon sequences
Seq C1 exon
GAAGCTGAACGGATGCTTCAGGATGATGAGGACACTGTGCACCTCCCATTCGAAAGAGGGAGTCTCCTGCAGATTCCAGTGAAAACTCTAAAATATAG
Seq A exon
GTAAGATACAACTTTATTTTCTATGCTGTTTTTTTTTTCCATGTGTCAAGTAAGGCATGTAATATTTCTTTAAAATAATGGTGAGTAAATGTTTCTGCAATGTCACCACAGTGGCAGGTTAGAAAGCTAGCCATTGAACATTTGATTCATGTGGTGAAAGCCTGGCAACCATTCCAAAGCTTTGTCTTTGTTTTGTGATACTACTCTTCAGTCTTAATGGTGTGTTTGTTTGGGCAAGATTGTACAGTGTAGCCCTGGTTGATCTGGAACTCACTGCGTAGACTAGTGTGTCCTCCAGTTCACAGAGATCCACCTATCTCTACCTCCAGAATGCTGAGATTAAAGGTGTGTGCCACCATGCCCAGCTGTAGTCTTACCTTAAATATTATGATGTAAAGTATGAACAGAAGTGGAAGTTTTTTAAGTATTAGTAAAGTATTAGTCACTTATAAGATAACTGTGCCATCTAATTTCTTCTTTCTTTAGTATCTGGTATTGAACGCAGGACTGTGTGCGTGCTTGGCAAGCCCCACTGAGCTACCTCCCTACCTTTTACAGTCTGGTTGCTATTGCTGTGATCAAACACCATGACTAAAAGCAACTGGGGGAGGAAAGGGTTTATGTTTCCTTTCTTTTCCTTATCACCGTTCGAGCAATTGGCAGCAGTTGATACAGAGGTCGTGGAAGATTTTGGCTTACTGGCGTGGTCTCATAACTTATTCAGTATGCTTTCTTTTTTTTTTTTTTTTTGTTGTTGTTGTTGTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTCTGCCTCTCTGCCTCTCTCTTTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTCTGCCTCTCTGCCTCTCTCTTTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTGCCTCCTGCCTCCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCATGCTTTCTTAAAGCACCCAAGACTACTAGCCCGTGGATGGCACCACCACCAACAAATGTGTTCTTCCCCATCAATAACTAATTAAGAAAATGCCTTACGGGCTTGCCTGCAGCCTGATCTTATGGAGGTGTTGTCTCGGTGGAAGTTTTCTCCTCTTAAATAACTCCACTTTGTCAAGTTGGCTTACACTAGAAAGCACAGCAACCCACATTTTATTATTTGTTCTTAGACAGGATCTTACTGACTTGCTATCTGCCCATGGACTTCCATGGTCTCCTCTTCAGCCTCTGCCTCCTGGTAGCTGTGGCTTCATGCTTGCGTTGCCCTTCTCATTAATATGCTCTAGTGTGACATTTGTGTTTGTAGCTTGTTTGCATGAATTGCTTTTTGTTTTGCAAAGAAAGGGGGCTAGAAGATGTATTTGCAACTTCATCTATGGAATATTCATATTACTTGTGACCAGTAACTTTTGAGCACATGTTATTTATGGGTATGATCATTCCATTGAGGGGTCTGACATCATTTTGCAGTATTTCATAGAAATGTTGAAAGGTTCTAGTCTTTGATTTTGATACATCTGATAAAAGTAACACTTGGATGCTAAAACTATGGGAATATCTAGTTAAAAGTTAGTGGGATCATTTTTTTGTTGCCAAATTGCTATTTTCAGAGCTTCCTTTTCAGTTGTGTTTTTTGTGGGTTTCTTTCTTTCTGTCTTTCTTTTTTTTAACTTGGAAAAGAAGGTTTTTTTTCCTCCTTTCTTACATTCTGTGACTTTTTACTTGATGAGAGTGTCAGTTGTAAGAGTTTTGGCTAACTCTCTGTTTTTAGGCTTCTAAGCTGGATTTTTTTGTTATATCAATGATACAGTCTATATAGTCAGAAGGTGCTGTAGCTGGAATAGTGCTGATGACCTGTGTAAATCCAAACTGAATTTTGCAGTGAAGAATTCTAAGTGAATTTTGCTAACATAAACAACACTGCATGGTTTTGGGTGTTTAAGGAACAAGGATTTCTCTGTGAAGACTTTATAACAGAATTCTAAGTTTATAGTAATTTGTTACATCTTAGTTTAAGTGCATGCCAAATGTTTTCTCAATTTTTAAATTGGTGAAAACAAGAAATTTTTTGATGCTAATAAAAATGACAGCATTAATGCTTTTGCAAGTACTGGATACTAACCAAAAAGTGTATTTGTTCTTCAG
Seq C2 exon
TATTGACCCTTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCCCAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACGAGACCTAACACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733:ENSMUST00000057015:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types