MmuINT0148361 @ mm9
Intron Retention
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35502055-35511962:+
Coord C1 exon
chr11:35502055-35502185
Coord A exon
chr11:35502186-35511807
Coord C2 exon
chr11:35511808-35511962
Length
9622 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTCCTTTCTCTCCTGTCCAGTGT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTGGCGACTGACAAGGACAATGGCATCCTTCTTTACAAGGGAGACAATGACCCCTTGGCACTGGAGCTGTACCAGGGCCACGTGAGGCTGGTGTATGACAGCCTGAGCTCCCCTCCAACCACGGTGTACAG
Seq A exon
GTAAAGACCTCCCCCTCTTGGCCACAGGATCCGTTCCTACAGAGCAGATACCAGGTGACTCTGGGGCCTCCTGTCCCACACAGACACAGCTCTCACACAGTGGCAGGTGGGAGGGAGAAAGGTGCTACTGGAGGCAGAAGCAGGAAAGGAAGGCAGGCCCATGTGGGAGATGACACCTCATTACCATAAGATAAATGGCCAGCTGGCTACTGTGCATGGAGCCAGGTGCTCCAATGGAGATGAGGCTGCTTAATGAGGTGCCCTTTTCAAAATGTCATCCTAATCTTTTATTAGTTTAAGAAAGAAAGCAGGACGATTAGCATGCAATTCAAGGAGAGGAAATTCAAGAGCACCCAGGGAACAGGACTATGCTTAAATGACTTTCAAACTGTCCTGAAAGACAGTGCTTCCTACACCTAAGTCTCTTTAAGTCACCCTGTAGGTTGGGCAGCTTGCTACAGCTGTAACAAAATGCCAGAGGCAACCAACTTATAAAGAGGGAAGGTTTCTCTTGGCTCACAGTTCTAGAGATTTCAGTCCATGGTCATTTGGCTTCGTTGCTTTGACTTTCTCATCATGGTGGGAAGCATGTATTAGAGTAAGCTCCTCACTTCATGGCAGCTGAAAAGCAAAGAGAGAAGAGGAGCCCGGGGTCTCATCATTCCCTTCAGCCTATGCCCCTCAGTGAGCAGAGGGCTTTTCACATAGACCCTATGTCCTGAAGGTTCCACCACCTCCCAGCCGCACCACAGACTCTGGACCAAGCCTTACACATGCAAGCTTTTAGGAGACACCTTAGACAGCAGACTGGAGCATGTAGTTTGACATGACTGCTGTGCAGTGGTTCCCTCGTGTGCCACTGTAAGCCGACACTAGGCCTATCACTCTCTCCAGCCTGACCTGAGAGCCACCTCATACAGACAGGCTCACTCACTCTAAATGTGTCCTGCTGTTTAGTAAAGGACGCAGTGAGCATCCCTCATCCAAGATAACTTTCCAGAGTCAGAAACCCCGTGGTGCCCATAAGTTTTCAGTATTTAGACAGTCCTCATCTACAAGGTAGAATTACCCTGCTCAGGCCCAGGCCTCTGTGTCTCCTCTAGCAAATCCAGTTTGAAAAGTCTTGGTTAAAGCCAGAGGGATGAGCTGGTGACAGTAGTGAAGGCCTTTAGTTCCAGTGCTCCACAGGCTAAGAAGTATGTGCGAATCTCTGTGAGTTTGGGGCCAGCCTGGTCTACATAGTGAGTTCCAGAACAGCAAGGGCTACCCTGCTTCAAAAAAGCTAAATAACCAAACAGCAGTCTGAGCTGGAGGGTATAGCTCAGTAGAAGGGTGTTTATCTAACTTGCATGCAGCCCCTGAATCCAGTCTTCATATCACACACAGACACACACACACACATACACACACACACACACACACACATATGCCCACACATGGTAGGGTGGGAGATGGAAGCAAGGGAAGAAGGAATCAGTGATTCTGAGAGCAGAGTGTAGTCCCTGAGGTGACGACACCTAGTAATGTGGTAAAAATACAGAAATACACATTTTTTCAGTCCTTTCCCCAGAAGAAATGAATCTGAAGCTACCAGGGAGGGGACAACAAATCTGTGTTTAAGGAATCCTTCAGGTGACTCTCATGCATGAGAAGAAGAGGAAAGAAAAGAAAAGAATTGAGATAAGGCCTTCCTGTGTAGCCCCAGCTGGCCTGAAACTCACTACGTAGACCAGGCTAGCCTTGAACACCCAGAGATCTATCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGGAATACTGGGATTAAAGGCATCTGCCACCAAATCCAGCTTGGTGCATACATTTCAGAAGCAGGGCTTTATGTGTGAGAGTTGGATCTTGAAGGGAGACACTTGCATGCATAGAGAGAACAAGTAGGCGGCTGTGTTGGTCGGGACTGTAGCAAAGACAAGAGTACCAACCAGAGCAGAAGGCTCACAGTGGAAGATGGGGAGAGACAAGGCCAGCCTTGGAGAGTAAGACAGAGCAGACACGAGATCTCCTAACGTCTTTGTTTCTGAAATTGGTGACCTTAGACCAAGTGGGAAGGACAGAAAGTAGCCTGATAAACTGTCTGACTTGTGTTACTTTGCAGGTTAAAGGAGTGTCTCCCCTCCCTCCCGGCCTCCTACCTATGGCACTAATGGGCATTTCCTAGGGTGCTGTTTGGTGTGGAACAGTGCTTGACAAATGAGCCGTGATGTGGATCTAAAGGATGGAGGGAGGAGGGGTGAGCTTCCAGAAGCAGCTGAGCTCGGTGCAGAGTGAGGAGTCTTCTGGAAACACAGTGCTGAGTTAGGGACCAGGAAACCATTGCTACCTCCTGAAGCTGCCACCAGGGAGCTGTATGAATGCATTGTGTCCACTAGGAAGGTGGCATGCCCTTGGAAAGAAGCAAGTGATGGGCCTCCAGGCAGATGATTGGATTCGCATGTCAACCCTGGTGGCAGAGCTACCCTTCAGCACATGACCATAAGGGGCTCCAGATTCCAGAAATCCCAAATGAAAAGTGATTTTATAGGACAGCTCATGTATGTTTATATCCACATCATCTAACAGCAATTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGTTTTTTGAGATAGGGTTTCTCTGTGTAGCCCTGGCTATCCTTGAACTCACTCTGTAAACGCAATTTATAATTCTAGCTTGCCTGTATAAAAGATACACCATCCAGATATTTTATTTTCAAGCCTAGACTGGGCAGGTTTGGAGCTGTTCTAACTCATTCCCCAGCTATAAAGTCCCTTGTTCCTTGCTGTTCTCCTGGCCACGTGTTCATGATCCATCTCCTCCTATGGCGGCCTCCTCCACCTCAATCTTCTCTCTCCTCCTCTCCCTCTCCCTGCTACCTCCTCATTCGATCCTCAAGTCCCACCGCTCTCCCTCTACTGCCCAGTCACAGACTCTGGCCTTTTATTGACCAGTTAAATTGGAAAGCAAGGTTCCCATCGCATCACTCGGTGTATACGTGACGATCTGCTCATGGGGGCAGCCACATCTTGAGAGCCAGAATTTAGGATTAGAATACAAGCAGCGTCAGATCAGCACACTACACACTCTGTAGGCCAGGCTGACCTCAAACTTGGAGATCCACCCACCTCTGCCTCCGAGTGCTGGGACTAAAGGTGTGTGCCACCACCACCTGGCAAGCATATACAATATTTTTAATAATACAGTGTTTTTATTGCAACTCATCACATGAGGTCATGTGTGGAATTTTCTACTTGTGACATCATATTAGGACTCTTTTTTGGGGGGTGAGTCTTTTGCATTTTGATTTTTTAGATAGAGGGATGTTCAACTTGTAGTGTCATCTCTCACTTGCTGACTTACTTGGTAAACATCTAAGTGTGGGGGACATGAGGTTAAGCATCCCCCACACAGAAGGCACACATGTTCATAGACAGTGGCTACACAGGCCTCCCTGGAGGTTCTCCAGCCTGCTGTGGGGACACTTGTGATCAAGGAGTAAATAGCTCTGTTTGGAAGCTAAGGGAGGGCGTTTCCACAGGGCAGGACGGGAGATGCCCTCTGTGAATGCCATGCTACTCAGCTGACAGCAGCTGAAAGGACAAAAGGCTGTTCCTCAGAGTCACTGCAGTGACTTCTTGCCACCTGGAAGGCCGTGTCAGTCTCAAATGAAAGCCAAGCCACCAAACCAAAGCTGACCGATTGGGAGAGCTCTGTCCCCTGAGACCCCATGAGCTAGCCCCATGAAAGAGTGAGCTGCCAGGGCCCCTGCAGGCTTCATCCTTCTAGAGCAACTGGGTTCCAGGGCCTCCCTCGGCCCATCCTCGATGCTGCTCAGGACCCCCAGTAGTCATAAGAAGTGAGGGAGTATGTCAAGATGCTGCTGTAGGCCACAGGGCAGACACTTCAAGCCCAGCTGGGTCTTTCCTGCCCCAGGAAAGGCCAGGCCTTCAGTATGGACACTTACCACGGGACTCCTCTACCCACAGGGCCAGGGGCCTTCAGGAAGGGCATCTAACCAGAACCTCAGTGGGTGGAGTTGTGAGATAGGAGCTATAGACTATGAAGAAAAACTGGGAAATTCAGTGTTTGGGGGGGCTATTTCTTAGCTTTTTTAAGGTTTTAAGGCTCAGAACTCCATGCACGAGTCAGCTCTACCTGGCAGGGCGCGTACCCTGGCAGTTTGAGTTGCCACCATCACTGCCAAGGTCCTGGTCCCATCTGATCCTCACACATGGAGTAGCAAACCATCACCACTCTATTTGAGGGCTGGGAAGCCTGATTGCTCAGAGAAATCCCGGGATGGGAAGAGCCTTGGACACAGGATAGGTTTCCATTAAACCCACCCTCCCATTGTGTGGCTGCAGGCTGTGGTACTAGGGTGCAGGAGTCAGTTGCCAGAGTAGGGTCCCTAGGCCCAGGCTGCTCGCCTAAAGAAATCACGGGAACTCTTTGTTCCTGCAGGGCTCTGTCGCCACCTATTGGCCACTCTTGGCATTGAGGGGGGGGATGACCACCTGGTAATCTTTCTTGTACAGTGGCCTGCAGTCCCTCCCTTAGCTGGGAGACATGAGTTTAAGTCCTGACTCTTCGTGAGGTACTCTAATTCCCTAGGCAGTGAGTCTCTTGTTTCCAAATGAGGAAAGATGTGGCTCCTGCCTGTGGGCTTGTTAGGGTTAAATGAAGGTCTTCAGCTCCCGCCCTTACTGCATGGCCCACCCACTGCCACTGCTCTCATAGAAGACGCTCTCGGTTCCCAGAAGCCATAGCATCCAGCTCACTGTAACTGTAGTTCTAGGACCCAACATCCTCTTCTGGCTCCAGGAAGCACCAGGCATGCAACTGGTGCACAGGTCCATGTGCAGGGGCTCACGTGCACGCAAACACTGGAGAGAACCGTGGGCCCCTCTGGCAATGCCTGTGGCCAGGGCAGCCCTATGCAGGAGCCCTCCAGCCTCAGCTACAGCACTGCGGCCACGGCTACTGTCTGGGCCCAGTGGACAGTCAAAGACTCTCAGGCCCTCGTCTCCCCTGACATCCCCAACGATCTCTCTAGGAGCCAATCACTGATCACCTGAGCTTGGCAATGCAGCATGGGCATTTCTCTTAGAGCAAACAGAAGGGTTGGGCTTGGCTTTTGTTCTTACCATCCTTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGCAGTATAGCCTTTTTCCCACTGATATTTTGATTTGGAAGATCTTTGTTTACAACTTTGACAGAAATCTCTGTTTGGTGTCTGCGATTGTGAGGGCAGGCATGTGCACTCCAGGGCATGCTTGTGGAGGCCAGGGAACGACGCCGTGTTTCAGTCTTCCCCTGCCACTTTGATACTGGCTGTCTTGTTTATTCCTGTATATGCCAGGCTGGCTGACCTGTGACATTCTGAGGGCTCTCCTGTCTCCACCCTCCATCTCTCTGAAACTTTGAGACTGTAGATACACACTACTGTGTCTGGCTTTACGAGGATTCTAGGGTCAACCTCAGGTATTGAATGTAACACATCTCTTTGCCCTCCAAGCCATCTCTCTGGCCCTTACACCTTTTTTAAGGGCAGGTAGGACAGGCAGACAAAGCTGTCCTTGGAGCCAGAGGAGCCCAACACTCCTGGGGCAGAGAATTGTAACTGCAGCCCTTGTTACCTTGATAGCTGCTGTAAGCACTGTCTCCAGCCTGGTAGTCCTCAACCATATGCCGACGCCTCAGATGGCCCTACAGAGCTCAGGAAGGAACAAGGGAATGGCTTTAACAGCCAGGAAGGAGCTAACAGTGCTGCTTGCTGTGCCAGAGTATATCCAAAACAGGAAAATAGCTACCCTGACTACCTTGACCCTTGCTTGGTTCTGGAAGGAAAGAAAGAGAAGACCACACAGCGGAACTCTGGCTTCATAGCTGCTTCTGATAGAGAGACTGCCTAATGCTCACCCAAGCATGAGGCCTGGCCTCCAGTCTGTGGTGCTATTAGGAAGTGGCCCATTGGAAGAGGAAGTGAGGTCACTGGGGGGTGGGGGGTGGGGGGACTTACAGGGAACATTGGCACCTTGGGATCCAGCCACTTCTTTCTTGCTTCCTGGTCACCAAGAAGTAAACAGGACTCTTTCAAAGACTGGCCTAAAACAGCTCTGGAATGCAACCTTTGGAACTGAGTTCCCAAATAGCCCATCCCGCCTTTCAGTTATAGGTCCCAGGAGCTCAATTACCAGGATAGCAGCAGCTCTGGGGTGGTCAGGGACACAGCTACATAGTTTTGCACATGCACGAAGGGAGGGCTTGGCCCTCTTTCTCTAACCTTGATACTAATCAACTTGCCTGCAAGAGGGCAGCATCTGCCCTCATTCATGACTCACTCGGTGCAGTAGAGATGCTTCTGACCCATCCACGCAGCTTGATGGCTGCTCAGCTCCCCATCACTGAACCAGACACCCCAGTGTCTCTCAGCTCCTGCCTCCATCCCTGAACCAGATACCCCGGTGTCTCTCAGCTCCTGCCTCCATCCCTGAACCAGATACCCCGGTGTCTCTCAGCTCCTGCCTCCATCCCTGAACCAGATACCCCGGTGTCTCTCAGCTCCTGCCTCCATCCCTGAGCCAGACACCCTGGTGTCTCTCAGCTCCTGCCTCCATCCCTGAACCAGACACCCCGGTGTCTCTCAGCTCCTGCCTCGCCCTCATTTTCCTGCTGCTTGGCTAGACTATGCTCAAAAGTTGGTCGTTTGATTTAGAGGAGATGTGTGGGCTTCGTGATTTGTTTCTAGTCCCCAGCACCTAAGACCATAGAACTCAGCCCTCAGCAGAAGCATGGGTAGATGGATAATAGACAAGCGGGTGGAGAGGAAGGAGCAAGAGTGGACAGGTCCATGAGGAGGAAAGGGGAAAAGAAGAAGGGAGTTTGGGGGGGATGGATGAAAGAGTGACAAATGGCTACGGGTTTTTTGGAGGACTTGTGTGGATCCCAGGATCAGAGCTACAGTGAAGATCACCAGGGTGCGGGCTGTGGCGGGTTCTTATTGTCAATGTTCTCTGTGTGCGTGCACGTGCACGTGGAGGCCAGAGGAGAACCTCAGGTATGGTTCCTCTGGGGCCGTCCATCTTTGGAGGCACCATCTCTCACTAACTTGAAACTGACTGCCAGGCTAGGATTGCTGATGGATAGTGCTGCCCCTGGCTTTTTCTGGGGGCTCTAGGGATCTAACTTGGTGCTTTCAAAACTAGCACTTAGCCCCTCGTAAATAGCACCAATATCACCAATATCACACTCCCCCAATAATTTGATCACCCAATAATTCTGGCACGTTACTCTCCCCCATGTGGGGGAGGACACTGAGATAGGGGACTTCTGTGATTGGCTATTGTTCTGCCCAACAGTGAGAGGATGGGGAGCGGCCTCCATCTCTGTCCCACCTGCCAACCTGTATAGTACCTGCCATTTCCCTCGGCTCTTCTGAAGTGCCACAGCCATGGAAACTCCCCCTGCTGCCTGTAAATCAGTGAGAATCCCAAGGAGACTTCAAGATGAGAGAGGCTCTCCTGTCCACCAATGAGACAGATCTACAGACTCCCCAGGGAGCCCCTTTCTTCGTGTCCCCAAAATCCTGTAACCCACCACAGTTCCCTCCCAGGCCCTGCCACTGAAAGTGTTCCGGGAGAAACAGAACTTTGGAACCAAAAGTCTTGCCTGTAAATCCTATCTCTAACATGTATAAGCTGGATGACCTCAGACAAATCACATCATCTCTCTGGGCCTCAGTGTTTTTATCTGTAAAGTGGTTATCTGGTACCTAATTGTAGAATTATCAAATAATAGAAGTGAGTGTGTTGGCACTGTACACAGCCCAGGTAAGTCCTGCTCTGTCACAGATGAGCTGGGGAAGGAGAGTAAACAGCCCTGTCTCCCTAAGCTGCCAACTCTGGAGTTCAGGAATAGGGATAAAACTCGCTTGGCACACAAGACCCTCTTTCTTTAGATGCGGCCTGCTCAGAAGTGGTGGTAATATAACGGATTCAGGAACAAGGACAAATTGCTGAAATCTTTTTTTTTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTTCCCCCCTACCCTCCCCCCCCACCTCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCTCTTTAGATCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCACCCAATAGCTGACTGTGAGCATACACTTATGTGTTTGCTAGGCCCCGGCGTAGTCTCACTAGAGACAGCTATATCAGGGTCCTATCAGCACAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTAGATTGCTGAAATCTTAACAGAGAGTATGTGCATTTCATACATGCTGAGGGGGAAAAAATCCCATCATACTGGAACGTTTTCTCCCAGATGTTTCTTTGGGCAAGGCTGAAGAGTTACTTCAGCGAGATTGACGGAGGAAATGGGGTATTTGAAGGGGCAGCATCTTCTGAGAGCAGGTGTCCAGGTGGTGTGTGGGCGGAGTCAGCCTGAGATGATGAGCTAAGGATAGCTTGCCTACTCTGAAAATCCGGGGCAAGAACTGAGCAGCCGCTGCTAACATGCATACCTTATCCTTGCGGAGGTCAAGGGTCATGACATGAATACCTTATCCTTGCAGAGGTCAAGGGTCATGACATGAATACCTTACCCTTGCAGAGGTCAAGGGTCATGACATGAATACCTTATCCTTGCAGAGGTCAAGGGTCATGACATGAATACCTTATCCTTGCGGAGGTCAAGGGTCATGACATGAATACCTTATCCTTGCGGAGGTCAAGGGTCATGACATGCATACCTTATCCTTGCGGAGGTCAAGGGTCATGACATGCATACCTTATCCTTGCGGAGGTCAAGGGTCATGACATGCATACCTTTCCTTACATCACTCATAAAAACTGGAGCTGAAAGACAAATAGAAGTAATTGAAGAGGAGCATGGGTAATTCGGCATATTTTCTGTTTTTATTTTTGCAACTTCTGTAACTCACAGTGGTTTCCAAATGAACGTAAAGCAGGACGCAAGCCGTGTAAATCCAACTTCAACCCGGTGCCTGGCCACGGAGCGCTCTTGACCTCTGGCTCTCTTCCTTTCTCTCCTGTCCAG
Seq C2 exon
TGTGGAGACGGTGAATGATGGCCAGTTTCACAGTGTGGAGCTGGTGATGCTAAACCAGACCCTGAACCTGGTGGTAGACAAAGGAGCTCCCAAGAGCCTGGGGAAGCTGCAGAAGCAACCAGCAGTGGGCAGCAACAGCCCCCTCTACCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-Slit3:NM_011412:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(33.3=97.7)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: