RnoINT0139687 @ rn6
Intron Retention
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20500556-20509585:+
Coord C1 exon
chr10:20500556-20500686
Coord A exon
chr10:20500687-20509430
Coord C2 exon
chr10:20509431-20509585
Length
8744 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTCCTTTCTCTCCTGTCCAGTGT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTGGCCACTGACAAGGACAACGGCATCCTTCTTTACAAGGGAGACAACGACCCCCTGGCACTGGAGCTGTACCAGGGTCACGTGAGGCTGGTGTATGACAGCCTGAGCTCCCCTCCGACCACGGTGTACAG
Seq A exon
GTAAAGACCTCTCCTCTCAGCCACAGAATCTGTTCCTACGGAGCAGACACCAGGTGACTCCGAGGCCTCCTGTCCCACACAGACACAGCTCTCACACAGTGGCAGGTGGGGAGGAGAAAGGTGCCAGTGGAGGCAGAAGTGGGAAAGCAAGGCAGGCCCATGTGGGAGATGACACCTCATTACCATAAGATAAATGGCCAGCTGGCTACTGTGCATGGAGCCAGGTGCTCCGATGGAGATGAGGCTGCTTAATGAGGTGCCCTTTTCAAAATGTCATCCTAATCTTTTATTAGTTTAAGAAAGAAAGCCGGGCGATTAGCATGCAATTCAAGGAGAGGAAATTCAAGAGCACCCAGGGAACAGGACTATGCTTAAATGACTTTCAAACTGTTCTGAAAGACAGTGATTCCTAAGTCTTTTTAAATCACCCCTGTAGGTTGGACAGCATGCTAGAGCCGTAACAAAATACCAGAGGGGATCAGCTTATAAAGAGGGAAGGTTTCTCTTGGCTCGCAGTTCTAGAGATCTCAGTCCGTGGTCATTTGGCTTCGTCACTTTGACTTTCTCGTCATGGTGGGGAGTGTTGTGTTAGAGCAAGCTGCTCACTTCACGGTAACTGAAAAGCAAAGAGAGAAGAGGAGCCTGGGGTCTCTTCAGTCCCTTCAGCCTATGCCCCTCGGTGAGCAGAGGACTTCCCACGTAGAACCTACTTCCCGAAGGTTCCACCACCTTCCAGCAGCACCGTGGGCTCTGGACCAAGCCTTCCATACACAAGCTTTTAGGGGACCCCTTAGACAGCAGACTGCATGTGACTTGACATGACTGCTGCTCCCTCGTGTGCCACTGTAAGCCAACACGGAACCTACTCACCCTCTCCAGCCTGGCCTGAGTGCCACCTCACACAGACAGGCTCATCCACTCCAAATGTTCCCTGATGCTCACTAAAGGGGAGGGTGAGCACCCCTCATCCGAGATAACGCTCCAGAGTCAGAAACCTTATGATGCGCACAAGTTTCCAGCATTTAGACTGTCCTCATCGAAAATGAGGTAGAACTGCCCTGCAGAGTTGGGAGGCCCAGGCCTCTGATTCTCCTCTAGCAAACCCAGTCTAAAAACCCTCGGTTAAAGCCAGTGGTATGAGATGATGATGGTAGCAAAGGCCTTTAATTCTAGTGCTCTGCAGGCTGAGAAGTGTGTGTGTGTGGATCTCTATGAATTCCAGAACACCAAGGGCTACCCTGCTTCAAAAGAACTAAATAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTAACAGTGTACTCATATAAATAAAATAAAAATAAAATTAATAAAAAAACTAAATAAACAGCAGTTAGAGCTGGAGGGCATAGTTCAATAGAAGGGTGTTTATCTAACGTGCATGCAGTCCCTGAATCCAGTCTTCATATCGCAGAAATACACACACAGAGGGTGGGGGAAGGGAAGCAAGGGAAGGAGTAATCAGTGGTTCTGAGAGCAGAGTATGGCAAAAATACAAAAATACACATTTTTTTTCAGTCCTTACCCCAGAAGTAATCAATCTGAAGCTACCAGACAGCAAATCTGTATTTAAGGAATCCTTCAGGTGACCCTCATGCATTTAAAAAAAAAAAAAAAGAAAAAAATTGAGATAAGACCCTCCCTCCTGTGTAGCCCCAGCTGGTCTGAAACTCACTATATAGACCAGGCTAGCCCCGAACACCCAGAGGTCTATCTGCCTCCACCACTGGAGTACTAGGATTAAAGGTGCTTGGTGCGTAAATTTCAGAAGCGGGGGTTAATGTATGAGAGTTGGATCTTGAAGGGAGAAACTCACATGTGCAGAGAGAACTCGAAGGCGGCTGTGTCAGGACTGCTGCAAAGACAAGCACCAACCAGAGCGGAAGGCTCCTGGAAGAAGGTGGGGAGAAACAAGGCCAGCCTCAGACAGTAAGACAGAGCAGACACTGGGTCTCCTATCATCTTTGCTTCTGAAACTGCTGACCTTGAACCAGGTGGGAAGAATGGAGAGCAGGGAGGCAGGCCCAGCAGCTGCCTGATAAACCATCTGCCTGAGAGAAAGCCCTCCTGTCACTTGGAGTGTTAAAGGAGTGTCTTCCTCTCCCTCCCCGCTTCCTTCCTGTGGCACTGATGGGCATTTCCTAGGGTGCTGGTTAGTGTGGATGGAACAGTACTTAGCAAATGAGCCATGATGTAGACATTCCAGGATGGATGGATGGATGAGAGGTGGGTTTCCAGAAGCAGCTGAGCTCTGTGCAGAGCGAGGGGCCTCTGGAAACACTATGCTGAGTTGGGGAAACCATTGCTACCTCCTAGAGCTACCACCAGGGAGTTGTATGAATGTGTTGAGTCCACTAGGGAGGTGGCATGACCTTGGAAAGAAGCAAGTGATGGGCATCTGGGCAGATGACTCAGATTCACATGCCAAACCTTGCTGCAGAACATTGCTGCCCTTCTGCACATAACCATAAGGGGCCCCAGGCTCCAGAAATCCCGCACTAAAAGTGATTTTGTGGGACAGTTCATGTATGTCATTCACATCATGTAAAGGCAGTTTTAGAGTGTATGGTGTGCGTGTGCGTGTGTGGTGTATGGTGTGTGTGGGGGTGTGTGTGTGTGTGTGTGTGTGGTGTGTATGTGTGTGTGGTATATGTGTGTGTGGTGTGTCTATATATGTGTATGTGGGGGTGTGTGGGGGGTGTGTGTGAGTGTGGTGTATGTGTGCATGTGTGATGTGGTGTGTGTATAGTGTGGTGTGTGTGTATGTGTGTGTGTTGTGTATGTATAGTGTGGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTTGTGTGGGGGGGTGTGGTGTATGTGTGCATGTGTGTGGTTGTGTGTATGGTGTGTGTGTATGTATGTGGTGTGGTGCATATGTGCATGTGTATATGTGTATGTGTGTGTGTATAGTGGTGTGTGTGTGTTTAGTCCTCACTGGCAGGGTTTCTCTGTAGCCCTAGGCATCCTGGACCTCACTCTGTAAGTTGAATTTATAATTCTAGCTTGCCTGTATAAAAGACACACCATCCAGATATTTTATTTATAAGCCATAAGCCTAGATTGACAGCTATGCTAACTTATTCTCTGGCTATGAAGTTCCCTTGTTACTTGCTGTTTCTCCTGGACACATTGCCCATGATCCATCTCCCTTCATGGCGACCTCACCTCAGTTCTCCTCCACCTCTGTTCTCCTCCACCTCAGTCCTCTTTCTCCTCCTCTCCCTCTACCTGCAACCCCCTCACTCGACATGACGTTAAGCATCCCACACACAGAAACATACATGTTGACAGACAGTGGCAGAATCTAACAGGCCTCCCTGGAGGCTCTCCAACCTGCTGTGGAGACACTTCCAAACAAGGAGTAAATGTCCCTGCTTGGAAGATAAGGAAGGGCGTTCCCACACGGCAGGGCCAGGAGATGCCACAACAGAGGCCCTCTGTGAATGCCATGCTGGGAGAGGCTGTAATTCATGACTTGTACTCTCAGCTAACAGCAGCTGAAGGGACAGAAGGCCATTCCTCAGAGTCACTGCAATGACTTTTCGCCACCTGAAAGGCCTCGTCAGCTTCAAATGAAAGCCAAGCTGCCAAACCAAACCATCGGGGGAGTTGGCAGCCTACAGATTTCTGTCCCCTGAGACCCCATGAGCTATCCCCATGAAAGAGTGAGCTGCCAGGGCCCCTGCAGGTTTTATCCTTCCAGAGAAGCTGGATGCTAGGGCCTCCCTCTGCCCATTGATTCTGCTCAGGCCCCCACTAGTCATAAGAAGTGAGGAAGCATGTCAAGGTTCTGCTGTCGGCTACAGGGCAGACACACCAAGCCCAGCTAGGTCTCTCCTGCCCCAGGATAGGATAGGCCTTCAGTGTGGAGACTTACCATGAGACTCCTCTGCCCACAGGGCCAGGGGCCTGTGGAAAGGGCAGCTAACCAGAACTCCAGTGGGTGTTGCTTCGAGGTAGATTATGAAGAAAAACTGGGAAAACAGGGTTTGGGGGGACCATGTCTTAGGTTTTTTAAGGTTTTAAGGTCTGATCAGAACTCCATACACTAGTCAGCTCTACCCAGCGAGGTGCATACCCTGATAGTTCAGATTGCCACCATCGCTGCTAAGGTCTTGGCCCCATTGGATCCTTAGCACATGAAGGATCGAACATCCTCATTCCTATTTGAGGGCTGAGAAGCCTGACTGCTCAGAGGAATCCCAGGATGGGAAGACACAGGTCAGGTTTCCACTAAACCCAACCCTCCCAGTGTGTGGCTGCAAGCTGTGGTACTAGGTGCAGAAGTCAGTTGGGGTTCCTGGGCCCAGGTTGCTTGCCCAAAGAAATCACAGGAGCTGTTTGTGGCTGCGGGGCTCTGTCGCCACCTATTGGTCACTCTTGGCATCAGGAGAAGTGACCACATGATAATCTTTCTTGTACGGTCCTACAGTCCCAGAGCTGGGAGACATGAGCTTAAATCCCAGCTCTTCTTCGTGAGGCCCTCTAATTCTCTGGGCAGTAAGTCTCTTGTTTCCAAACGAGGAAAGATGTGCCTCCTGCCTGTGGGCTTGTTAGGGTTAAATGACGATATTTCAGCCCCTGTCCTTACCCCACAAACCGCCCATTGCCACTAGGAAAAGAGAAAGAAAAAAGCATTTCCTGCTCTTGTAGAAGATGCTTTCGGCTCCCAGAAGCTATCATACAGCTCACTGTAACCCTAGTGCTAGGAGATCCAACATCTCTTCTAGCTTCAGGAAGCACCAGACAGGCAAGCGGTGCACATACATACATACATACATACATACATACATACATACATACATACATACACACACGTGCAGGCACTCACGCATACACAGACAATAGCTACGTCCTTAAACACAGAAGAGCACCGTAGGCTCCTCTGGCAATGGCTGTGGCCACAGCAGCTCTAGGCAGTAGCCCTCCAACCTGGCTAATGCAGTGCCACTGCTACTCTCTGGGCCCCGGGGAACAATCATGAAGACTCTCAGGCCCGTCACCTCCCCTGAAATCCCTAATGATCTCCTCAAAAGACCACCTGCGCTTGGCAATTCAGCAAGGTCAATTCTCTTAGAGCAAACGGAAGGGTTATGTTTGGTTTTTACTTTTACCATCTTTGTTGTTGTTGTTGTTATTGTTAGCGGTATGGCTGTTTTCCCACTGGTATTTTGATTTGGAAGACCGGTATTTACAACCCTGACAGAAATCTTTGTGTGTGTCTGCGATCGTGAGTGCAGGCATGTACACACCAGGGCATGCAATGTGGAGGTCAGGGAGTCTTCCCAGCCACTTCGTTTGATGCTGGCTCTCTTGTTTATTCCTGTGTATGACAGGCTGGCTGACCTGTGACCTTCTGAGGGCTCTCCCGTCTCCACCCCCCATCTCCCTGAAACTCCGAGATTATAGATACACTGTGTATCTACAGTGTCTGGCTTTATGAGGATTCTAGGATCCAACCTCAGGGGTTAACTGCTACACAGCCACCACCAAGCCATCTCTCTGGTCCTTACGACTTTTGTTTTAACGGTGGGTGAGACAGGCAGACAAAGCTGTCCTTGGAGCCAGGGGAACCTAACCCTCCCTGAGGCAGAGTGTTGTAACTGCAGCCCTCTGTAGCTGCTGTAAGCACTGGACCCAGCCTGGTGCACAGCCAGGAAGGAGCTAATGGGGTTGCTCGCTGTGCCTGAGTATATCCAAAACAGGAAAATCACTGCCCCGACTACCTTGACCCTTACTTGGTTCTGGAAGGGAAGAAAGAAGGCCACACACATAACCCTGGCTTCACAGCTGCCTCTGATAGGGAAGTTGCCTAATGCTTACCTAAGCAAGAGGCACACCAAGGAAGTGGCACATTGGAAGAGGAACTGAGGTCACTGGGTGGCTGTGCCCTTACAGGGAACATTGGGACCTTGGGACCTAGTCCCTTCCTTCTTGCTTCCTGGCCACCAAGAAGTAAACAGGACTCTTTCAAAGACTGGCCTAAATCAGCTCTGGAATGCAACCTTTGAAACTGAGTTCCCAAATAGCCCATCCTTCCTTTCAGTTATGGGTCCCGGGAGCTCAATTACCAGGACAGCGGCAGCTCTGGGGTGGTCAGGGACACAGCTAGAAGTTTTTGCACATGGTTAGAAAACTAAGCGAGGGCTTGGCCCTCTTTCTCTAACCGTTATACTAATCAACTTGTCTGCAAGAGGACAGCCTCTGCCTGCTGTGACTCAGGGCAGTTGAGATGCCGCTGATCCATTCACACAGCTTCTCCACTGCTCAGCGCCCCATCCCTGCACCAGATCCCCCAGTGTCTCTCGGCTCCTGCCCCACCTTCATTTTCCTGCTTCTTGGCTGGACCTTATGCTCAAAAGTCGGCTGTTTGATTTAGAAACGTGGTGGAGTGTGGGCTTTGTGATTTGTTACTGGTCCCCCAGCACCTAAGACAGAAAGGCTGAGCCCTCGGTGAAAGCGTGGTAGACGGATGGACAGACTGGATGAGTGGATGGAGGAAACAGGATGTGTGGATAGATAGACAGGATGTGTGGATGGACAGTCAGGATGTGTGGGTAGATAGAGAGGAAGGAGTAAGAGTGGACAGGTCCATGAGTAGGAGGGAGGGAAAGAGGAAGGGAGGGTGGGGAGGACAGATTATGAGCTGACAAATGGCTACGTTTTATTTTGGAGGACTTGTGGGGATCCCAGGCTCCTCTCCATTGCTTTCTCTCAGCATCAAAGCTATAGTAAGGATCACCGGGGTGCAGGCTGGGGTGGGTTCTTATTGTCACTGTTCTCTGTATGTTTGCCCGGACACATGGAGGCCAGAGGACAGCCTCAGACATGGTTCCTCTGGTGCTGTCCATCTTCTTTGGAGACATAGTACCTCACTGGCCTGGGACAGACTGACGGGCTAGGATTGCTAATGTGCAGTGCTGCCCTTGGCTTTTCCTGTGGGTTCTGGGGATCTAACACGGAGCTTTCAAGACTAGCACTTCACTGACCCAGCTCTCTTCCGTAGCTCCTCAAAATAGTACAAATATCACCAATAACTTGATCACCCAGTAACTCTGGCAGGTGACCCTCCCCCTTGTGGAAGACACAGAGACAGGGATTCTGTGATTGGCCATTGTCCTGCCCATCAGTGAGAGCATGGGGAGCGGCCTCCATTTCTGTTCCACTCACCGACCTGTTCAGTATCTACCATTTCCCTCTGGTCTTCAGAAGTTCCACAGCCATTCAAGCTTTCCCTGCTACCTGGAAAATCGGTGGGAATCCCAGGGAGACTTCAAGATGAGGGAGAGACTCTCCTGTCTGCCACCCACACCTGAACCAATGAGACAGATCTACAGACTCCCCAGTGAGCCCCTTTCTTCACGTCCCCAAAGTCCTGTAACCAACCACAGTTCCCTCCCAAACCCTGCAACCAACAGTGTCCTGGGAAAAACAGAACTTGGCAATCAAAAGTCTTGCCTGTAAACCCTATCTCTGGCCTGTATCAACTGGGTGACCCCAGACAAATCCGGTAACTTCTCTGGGCCTCAGTATTTTTATCTATAAAGCGGGTTATCTGGTACCCAATCGTAGAAATATGAAATAATGTAAGTGAGTGTGTTGGCCCTATACATGGCCCAGATAAGTCCTGCTCTGTCGCAGAATAGCATGGGGAAGGGAGTGAACAGCCCTGTCTCCCTGAGCTGCCAAGTTCTGGGATAAGGATTAGACTCGCTTGGAGCACGAGACCCTCTTTCCTCAGATGTGGCCTGATCAGAAGGGGTGGTTTATACAGAGGATTCAGGAACAAGGACAAATTACTGACATCTTAACTGAGACAGTGTCTGTTTCATACATGCTAGGGGGAAAAAAAAATCACATCATACTGGAATGTTTTCTCCCAGACGTACCTTAGGACAAGGCTAACTCTTCAGCGAGGTTGACAAAGGACATACGGTGTTTGAAGGGACAGCATCTTCCGAGAGCAGGTGTCCGGATGGTGTGCGGGCAGAGCCAGCCTGAGATCATTGGGCTAAGGATCGCTTGCCTACTCTGGAAAAAAAAACAAAAAACAAAAAAAAAACAGGGCAAGAACTGAGCAGCAGCTGCTGCGGCGGCCCTGCAAGGACTCTGTGGTGGGAACAGAAACCTGCTGCAAGGGCCGTGGCTGGGGCCACTGCACATCCGTACAAATAAAGGGTTGGAATGAACGTTAGCTGCTCCCTGTTCAGTCAGCACACTACTTATGTGAGAGAACAGCCCAGTCCTTGGGAGACACAGCTGAGGGATCCAAAGGCCATGATGTGCATACCTTATCCTTACAGAGGTCAAGGGTCATGACATGCGTACTTTATCCCGACAGAGGTCAAGGGTCATGACATCCATACTTTATCCTCACATCACTCATAGAAACTGGAAGCAGTCGGAGAGAAGAGCGTGGGCAGTACGGCGTACTTTCTGTTCTTATTTTCGCAACTTCTGTAATTCGCAGTTGTTTCCAAATGAACGTAAAGCAGGACGCAAGCCTCGCAAAAACCAACTGCAGCCCGGTGCCTGGCCATGGAGTGCACTTGACCTCTGACTCTTTTCCTTTCTCTCCTGTCCAG
Seq C2 exon
TGTGGAGACGGTGAATGATGGCCAGTTTCACAGTGTGGAGCTGGTGATGCTAAACCAGACCCTGAACCTGGTGGTAGACAAAGGAGCCCCCAAGAGCCTGGGGAAGCTCCAGAAGCAGCCAGCAGTGGGCATCAACAGTCCCCTCTATCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377:ENSRNOT00000009714:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(33.3=97.7)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]