MmuINT0149569 @ mm9
Intron Retention
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26233541-26234156:-
Coord C1 exon
chr2:26234014-26234156
Coord A exon
chr2:26233588-26234013
Coord C2 exon
chr2:26233541-26233587
Length
426 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGTGCTTGTGTTTCTTACAGATT
3' ss Score
11.76
Exon sequences
Seq C1 exon
GCAGGCTGAAGCCATGGACATAGACGCCGAACGAGAGAAAATAACACAGGAGATCCAGGAGCTTGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAG
Seq A exon
GTGTGCCCATGAACCTGGCCTAGCACGGCATGGCTGGAACGGCTGTGTGTACCCTTTAGCTAAATTAGGCTGTGGACTGTTCCATGGTCAGACTCTGTTTCTTGCCCAAACTGTCTTCTACTTTCACCTCAGTAAGAAAGTTTGTTTCAGTTTCTTAGTCTTAGCTGTCAGGGCTGCTGACTATTTGTGTATAACCACCCCTGCTGCCATCTAGCCTGGGACCCTCTAAGCAATGGTGAATCCTGGTGGGGAGAAGAGGACCCAGAGCTCAGCCTATCAACTTGAATAGTCTCCATGGCCCAGATACACAGAATTTCGTCCCTGAGCACTCCAGTGAGACCCTGTTATAAGTGTTCATTTTTGTCTATAGCATACTCTTGCTCCCCATGCTCCCACTCCAATAGAGTGTGCTTGTGTTTCTTACAG
Seq C2 exon
ATTCGCTGCCTGATGAGGACTTGGAAACTGCTGGTGCCCCCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-Snapc4:NM_172339:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0364610=FlaG=PD(93.5=87.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: