GgaINT0126118 @ galGal4
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7892326-7892793:+
Coord C1 exon
chr17:7892326-7892470
Coord A exon
chr17:7892471-7892780
Coord C2 exon
chr17:7892781-7892793
Length
310 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGG
5' ss Score
8.92
3' ss Seq
TCCGCAGCTGTTTTACTTAGCAT
3' ss Score
1.64
Exon sequences
Seq C1 exon
ATGTCCCGGCGGGACGGCCCGACCGGGGCCAACCTGAACGCGGAGCGGGAGAAGATCCGCCGCGAGATCGAGGAGCTGGAGCGCAGCCTGCAGCTGGACGTCACCAGCGTCGATGTGGCCGTGTCGGACTCCAGCCTCAGCTCGG
Seq A exon
GTACGGGGCCGCAGCCTGCGCGGGGCACGGCCCTCCCTGCGGGCCCGGCGGGGCGGGGGAGGGCTCCGTGGGCCCCTTCGGCCCCCTCAGGGCGGGCGCAGCTGCGCCTCGCCGGGACGCGCTCGTTTCCCGCTGTCCGAACGGACACGTGCGGAGGGGCTGCGTCAGATTCCATCTCCGCACTGACAGCGGAGCCCGGTGTTGCTGCAGGGCTGCTTGCAGGGCGTGGGTGTGCTGGGATGCACGCTGTGCCGCTGCACCACGGTGCTGCTCTTCTGTCGCTGCACTTATCCGCAGCTGTTTTACTTAG
Seq C2 exon
CATCAAACGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]