GgaINT0126118 @ galGal3
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8581452-8581892:+
Coord C1 exon
chr17:8581452-8581569
Coord A exon
chr17:8581570-8581879
Coord C2 exon
chr17:8581880-8581892
Length
310 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGG
5' ss Score
8.92
3' ss Seq
TCCGCAGCTGTTTTACTTAGCAT
3' ss Score
1.64
Exon sequences
Seq C1 exon
GCCAACCTGAACGCGGAGCGGGAGAAGATCCGCCGCGAGATCGAGGAGCTGGAGCGCAGCCTGCAGCTGGACGTCACCAGCGTCGATGTGGCCGTGTCGGACTCCAGCCTCAGCTCGG
Seq A exon
GTACGGGGCCGCAGCCTGCGCGGGGCACGGCCCTCCCTGCGGGCCCGGCGGGGCGGGGGAGGGCTCCGTGGGCCCCTTCGGCCCCCTCAGGGCGGGCGCAGCTGCGCCTCGCCGGGACGCGCTCGTTTCCCGCTGTCCGAACGGACACGTGCGGAGGGGCTGCGTCAGATTCCATCTCCGCACTGACAGCGGAGCCCGGTGTTGCTGCAGGGCTGCTTGCAGGGCGTGGGTGTGCTGGGATGCACGCTGTGCCGCTGCACCACGGTGCTGCTCTTCTGTCGCTGCACTTATCCGCAGCTGTTTTACTTAG
Seq C2 exon
CATCAAACGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]