RnoINT0140849 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3823680-3824284:-
Coord C1 exon
chr3:3824155-3824284
Coord A exon
chr3:3823727-3824154
Coord C2 exon
chr3:3823680-3823726
Length
428 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTGCTTGTGTTTCTTATAGATC
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATGGACATAGATGCCGAACGAGAGAAGGTAACACAGGAGATCCAGGAGCTCGAAAGGATTCTGTATCCTGGATCCTCCAGCGTCCACTTTGAGGTCTCTGAATCCAGTCTCAGTTCGGACTCTGAAGCAG
Seq A exon
GTCAGTGTGCCTAGCCTAGCATGGCATGGCTGGGCCAGCCGTGTGACCCTTTAGCTACATGAGGCTGAGAGCTGTTCCATGGTCAGACTCTGTTTCTTGCCCAAACCGTTCTCTGCTCTCACCTCATTTAAGAAAGTTAGTTCCAGTCTCTTGGTCTTAGCTGTCAGGACTGTTGACTGTAGGTGCACATCTACCCCCGCGCCCTCTGGCCCGGGGCCCTCTAGGCAATGGTGGATCCTAGTGGGGAGGGGAAGACCCAGAGTTCAGCCTGTCAGCTTGAATAGTCTCCATGGCCCAGATACCCAGAATTTCTTCCCTGAGCTTCCTGGATAGCTCTCCTGTGGAACCCTGTTATGAGTGTTCATTTTTATCTCTTGCTACCCATGCTCCTACTCTAATATAGTGTGCTTTGCTTGTGTTTCTTATAG
Seq C2 exon
ATCCTCTGCCTGATGAGGACTTGGAGACTGCCGGTGCCCCCGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]