MmuINT0169542 @ mm9
Intron Retention
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69829482-69831869:+
Coord C1 exon
chr2:69829482-69829694
Coord A exon
chr2:69829695-69831732
Coord C2 exon
chr2:69831733-69831869
Length
2038 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
TATGTTCACTTTTTTTATAGTCA
3' ss Score
7.15
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCAGTGGACAAAGGAGAATTCACGTGTCCCCTCTGTAGACAGTTTGCCAACAGTGTTCTTCCATGTTATCCTGGAAGCAATGTGGAAAATAACCTTTGGCAACGCCCTTGTAACAAAAGCACGCAAGATCTCATAAAGGAAGTGGAAGAGCTGCAGGGACGGCCGGGAGCTTTCCCAGTAAGCATCAGT
Seq A exon
GTAAGGCAGAAATATCCTGGCTAACTTATTAACTTTGTCTGTTTTTCGGTTCCCTCCCTCCATCCCCTCCTCCCTCCTTCCCTTTAGTCCCATCTCTTCCCTACTTCCTACCGTCTTTTCTTTTTTTCCCTAAGTTACCCTGGGCCTTTATGCATTTAGTAGAAATTGATTTTTTTGAAGTTTGTGTCTTCTGTTTGTGCTCATTGAAAAGCAGAATGAAAATTGTAGAAGAAATTATCAGATGTTATGTTTTTCTTTAGTTAAAATCATTATAATTTTAATGTATTAAGACTATCATGAGCTTAAATTTTGTTCTTGTTAGAGTTATCATTGCTGTGATGGAACACCACGACCTTAAACAAGTACCACATCCCTGTTTATTATTGAAGGAAGTCAGCACAGGAGCTCAGATGGGGCGGAATCGCCCTGGCAGGAGCTGATGCAGAGGCCTGCTGCTTGGTCCTCATGACTTGCTCAACCTGCTTTCTTTCTTTTTTCTTTTTTGTTTTTTGTTTCTTTGAGATAGGGCTTCTCAGTACAACCAACCCAGACTGTCCTGTACTTGCTAGTAGAGGACCTTGAACCCGCAGAGATTTGCCTGCCTCCAGCTCCCAAGGGCTTGCCCTTGTAGGTCTAAGAAAAGGATCTACAAGTTTGCCTACAGCCTGATCTTATGGAGGCATTTTCTCAATTGAGGCTCCCTCATCTCTGATGACTCTAGCTTGTGTCAAGTTGACATAAAACTAGCCAGCACAAGCTTAAATGTGGTTAGACTCTTTAAAGATGTTGAAAAAAGAAAAAGCAAAGCAAAGCAAAAAGCATATGTGTTATTTTGCTTATTGAGCAATGGATACATTCTGAAAATGGCATCAGTAGATAATTTTGCCATTGTGTGAGCATCAAATTGTATTTATACAAACCAAATGGCTTTGATGTCTCTAGGTAATATAATTTTAAGGGACTACCAAAGTATATGTGGCCTATGCTGTACCATAGTACATGAGTCTCTGTCTCTGTCCCAATGTACAAATATAATATAGCATATAAGTATCAAATACATGTTTGAAAATATATCATTACTTATATTGACATTAAGATTGATAACCTGAGTTTAATTCCTAAGGACTCATGTGCTGGAAGGAGACAACTAACCACCCCAAGCCGTCCTGCGGCCTCTCCACATGTGCCATAGCATCCATGACCCCACCCACATATGTGTGTGCATGTGTACACATACCACATACATGTAATAAAAACTAAGAACGTTTATACACAGCTTTATTTACTCTGTGTGATCATTCACTACAAACTGGTCTTCTAGAATGTGAATTGGCTTAAATGATTCTGCTTTTTAATTCCCACCAACAGAATTTGTGTGGCTTAAGTTCTTAAAATGTTTTAGCTCTGTTGTAGATTTTTGTTATGGTTTCTAAAGGATGTGACTTTACTGCCATTCTACTTTTTTGTAGTGTTGGGAATTGAACTTGAGGCTTCTCACATAGTAGGCAGCTACTCTGCCATTAAACTAAGCTTTTGAAATAAAAGTTTGGACGTTAAACCATACAGATTTATGTCTTGGCATTTACTTTCTCAAATGAAGACTAACTTTAGAATCTGAGGGGTATTTGGTATGTAAATTTTATTCAAAATTTGCCAGAAAGTAAGGGAAATTGGTATTATATTTCTTTGAAAACTGAACTTAAATAAAGTCAACTTTTTGGGAAACATGGAACTGATTCTAAAATGTTATTTAGTATTATGTACTCATTAGATTAGAGTTTGTATTGCTAACTCAATAATTCATAATTGGGTTTTATCATAAATGGATATTACCAGTTGCCATCCAGAACTTGAGTAAGATAGATTCAGTCTTGATTAATTTTTCTTTATACACTAAATTGTGCAAAGTTGTTTATGTTACATCTACTTTGATTTAATGTTAATTTTCTAGTGTGTTTATATAATAAATATTTCAGTTTTAAGCTACTACTAAAGAAAAGTAATGTGAGTTTTATATGTATGTTCACTTTTTTTATAG
Seq C2 exon
TCAGAAACCAACTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCACCAGACAACGAGTTTCTCTTTATGTACTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-Ubr3:NM_001081548:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.363
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(35.7=29.9),PF0062824=PHD=PD(46.8=32.8),PF0080420=Syntaxin=PU(44.0=32.8)
A:
NA
C2:
PF0080420=Syntaxin=PD(52.0=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: