RnoINT0159651 @ rn6
Intron Retention
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56239997-56242493:+
Coord C1 exon
chr3:56239997-56240209
Coord A exon
chr3:56240210-56242356
Coord C2 exon
chr3:56242357-56242493
Length
2147 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
GTATGTTCACTTTTTTATAGTCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCAGTGGACAAAGGAGAATTCACATGTCCACTCTGCAGACAGTTTGCTAACAGCGTTCTTCCATGTTATCCTGGAAGCAATGTGGAAAATAACCTTTGGCAACGTCCTAGTAACAAAAGCACACAAGATCTCATAAAGGAAGTGGAGGAGCTGCAGGGACGGCCGGGAGCTTTCCCAGTAAGCATCAGT
Seq A exon
GTAAGGCAGAAATATCCTGGCTAACTTATTAACTTTGTCTGTTTTTCAGTCTCCCTCCCTCCTCCCTCCCTCCCTTTAGTCCCATCTCTTCCCTGCTCCCTACAGTCTTTTCTTTTTTTCCTAAATTACCCTGGACCTTTGTACATTTAGTAGAAATTGATTTTTATAGTTCATATCTTCTGTTTGTGCTTATTGAATAGCAGAATGAAAATTGTAGAAGGAATTATCAGATGCTATGCTTTTCTTTAGTCAAAATCATTATAATTTTAATGTATTAAGATTGTCTTCCAGATCATGAACTTAAGTTTTGTCCTAGTTAGGGTTTTCATTGCTGTGATGAAACACTATGACCAAAAACAAGTTGGGGAGGAAAGGGTTTATTTGGCTCACACTTCCACATCACTGTTCATCATGAAAGGAAGTCAGGACAGGAGCTCAGACAGGGCAATGAAGGGGACAGGAGCTGACACTGAGGCCATACAGGGTGCTGCTTATTTGCTTGCTCCCCATGACTTGCTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGGACAGGTTTCTCAGTATAACTACCCCAGGCTGTCCTGGACTTGATGTAGAGGATGGCCTCAAACTCACAGAGATTCGCCTGCCTCTGCATCTGGAGGGCTGGCCCCTTTTCCCCCACACCCCAATCACTAATTAAGAAAATGCCCTACAAGTTTGCCTGTATCCTTATCCCTTGGAGGCATTTTTTCGATTGAGGCTCCTTCCTCTCTGATGACTTTAGCTTGTGTCAAGTAGACACACAGCCAGCCAGCACAAGCTTAAGTATGGTTAGGCTCTTTAGATGTTGGGATATTTACAAATAAAGCAAAGCAAAGACATACTTGTTATTTTGCTTTTTTAGCAATGAATAGATTCCAAGAATGGCATCAGTAGATAATTTTGCCATTGTGATGTTCTGTGTGAACATCAGAATATATTTATACAAACCAAATGGCTTTGATGTCTCTAGGCAATATAATTTTAAGGGACCACCAAAGTATATGTGGCCTATTCTGTACCATGGTACGCGACTCTATCTCTGTCTCAATGTACAAATATAATATAGCATATAAGTATCAAATATAATGTTTGAAAATATATCATTATTATATTGAGATTCAGCTTGATAGCCTGAGTTCAAGTCCTAAGGATCACGTGGCAGAAGTAGACAGCTAAGGTGCCAGGCGGTCCTCTGGCCTCTCTACGTGTGCCGTAGCACGCGTGAGCCCACTCGTGTACATGTATGCATGTGTCCACATGCCAAGTGAACGCAATAAAAATTAACAACTCTCACACACGTCTTTATTTATGTGTGTGTATTAGAAAATGCTACGTGACTGTTCACTACAAGTTCGTCTTCTGTAATGTGAATTGGCTAACTGATTCTGTTTTTTAATCCCCATCAGTAGGATTTGTGTGGTTTAAGCTCTTAATATATTTTACCTATAGTGTAGACTTCTGTTACAGCCCCTAAAGGCTGTGACATACTTTACTACTCCTCTACCATGCCTGCCATTCTACTTTTTTGTAGTGTTGAGAATTGAACTTAAGGCTTCTCACATACTAGGCAAGTGCTCTGCCATGAAACAAAACTTTGGACACTAAACCATCCAGATTACATCTTGGCATTTACTTTCTCAAATGAAGACTACCTTTAGAATCTGAGGGGCTTTTGGTGTGTAAATTTTATTTAAAATTTTCCTGAAAGTAAAGGACATTGATACTATATTTCTTTGAAAACTCAACTTAAATAAAGTCATCATTTTTAGAAACATGGAAGTGATTCTAAAATATTATTTAGCATTATGTACTCATTAGATTAGACTAGAGTTTGTATTGCTAACTCAAAATAATAATTCATAATTGGGTTTTATCATAATTGGATATTATCAGTTGCCATTCAGAATTTGAATAAGATAGATTCAGTTTTGGTTGATTTTTCTTTGTGCACTAAATTGTGCAAAGTTGTTCATGTTCCATCTCCTTTGATTTAATGTGAATTTTCTAGTATGTTAATATGTCAAATATTTCAGTTTTAAGCTGTTATTAAAGAGAATTAATATAAGTTTTATATGTATGTTCACTTTTTTATAG
Seq C2 exon
TCAGAAACCAACCTAAGTAAAGAAATGGAGTCTGTAATGAAAGATATAAAAAACACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCGCCAGACAATGACTTTCTCTTTATGTACTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616:ENSRNOT00000011380:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.283
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(33.9=26.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]