DreINT0170999 @ danRer10
Intron Retention
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3956798-3960780:-
Coord C1 exon
chr9:3960580-3960780
Coord A exon
chr9:3956935-3960579
Coord C2 exon
chr9:3956798-3956934
Length
3645 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
GTTATTTTCCCTCTTCCCAGATC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AATGATCAGGTTCTTCAGGGGATTTCTGTGGATAAAGGCGAGTTCACTTGTCCGCTTTGCCGCCAGTTTGCAAACAGTGTTTTACCTTGTCGTCCTGGACGAGGGATGGAAACCGGAGCCTGGCACGCACCCAGTACCAAGAGCATGTCTACACTGGTGAAAGAAGTAGAAGACCTCCAGGAGCAGCTGGGCATTTTCCCA
Seq A exon
GTAAGAGCCAGCATAAAGCAAAGAGATCCCATTCTGGTATTTATTAGAGTGCTCCCCATCCCCTCTTTTCTGTTCTTTCCATCTCATCCCTCCATTCTGATTCAGAGTAAGAGCTGGTGCCACACTGACCTTCATGTGATCTTTCATGCCCCATCTAACATTGCTGTGGTTTAACTTCTCATAATGCAAAGACTCAAGTTGGTGTCATATATGCATGTCAAACATTAGTGAGGTACTGAATTTTCTGTCACTGAAACTGAAAGACAAAAATAGCCATAAATAAGTGTATGAGCCAAATTGTGTCCCTTTCAGTTTGCTGGTTTTGCTCTCCCTGCACTGTGAGAAGCGGCTTTCACACTGGACAAACAAAGCACTGCGCTATGAAACCCGTTCATTTCAATGGCTTGTACCGTACAAGGGGGGTTTGTTGTGCTTTGAAGTGCACATTTAACAAGCTTTAAAATTTGAAATGGCTCAATATTAAGGTCTTTGCACACTGAAGTCTGAAATTTTTGTATGCCTTTTTTTCGTATTCATATTCAAAAATTTGTCATGTAAGCAAATATAGAGTCCGATGCATATTCATTATCCATTCTGAAGATTGTGTTCTTCCCATACTACATAGAGAAGAGGGAGATTATCCTCAAAAGCAAAGTTTATTTCTGGAAATCAGTGGAATTTTGAGTGCTTGTGTTTTACATTTAGTCATTTAGCAGATGCTTTTATCCAAAGCGACTTACAAATGGACAATGAAGCAATTTACACAACTATAAGAGCAACAATGAATACGTGCTGTAGGCAAGTTTCAGGTATTTAAAGTGTAAGAAGCAAAACACTTGTCATTTTTATTCTTTTTTTTTTTTTTTAATAATACAGTTAGCTGTAGAATAACTGTACCTGCAGCGTAGCTCCCGTGCTTTGCCAGTGTTAGTAACAACAGGAATTAGTAAACACATAATAAAAGTTCAATGAAAACAATAATAATTGCAAAGATAAAGTAAAATAAATAAGTACTCAAGTGCTTTGTCGGTGTCTTTGCTCGGTGGAGTCGCGCAGGTAGAGTCGAGGGTTTTCACACTCGTCGGTCTTCACACGAGGCTGCCGAGACTAGCTGCTTAAATTCACCTCTGAGCGCTTGCTGATTGAATTCAGCTGGACACGCCTCGAGAGTACCCACAATAAAAACAACAAAAACTGAGGCGGGGGGGCGCGAAACCGTCCGCGAGACACACACAAGCTCTTACAGTAACCAAGGAAACAGTGAGTGAACTTTCTAATAATACTGAAAACAAGTCTAAATGTCCTAGAACCATACACAAACAACTGAAAACAAGTCTAAATGTACTTACACACTGCTGGTGTTGTTGCTAAGCACACTAAATGTCCTAGAACCATGCACAAACAACTGCAAGCAAGTCTAAATGTACTTACATGTTGGTCTCATTGCTAAAGTGCTTTTTACTTTTATAAAGTGATACTTAATTTTATGCACGTAAACAAATTCAGAACAGAGACTAGCAGTACCTTCAGACATTATAATAGATGGCGGCCGCATTGACATGTCACAGCAACGGGCCGAAGTGGATCATGAGGCGATTATAATGGACAGGCTGCAGGCTGTACGTCAAATGTACGGACACAAACACCCCAAACAGCAGCAGGGGAGATGTGCGCTAGTCACAGAATCCAGCATATAGGGATACTATTCTATCCACCACATTCTGTCTCTTATTATGCACCGTGTTTGTCATAAAGTTATCTGTGGCTATGGTGACAACATTTTGTATTTTGCCTTTCGCTTGTACGACGGCTCTGAACTGTCAAAACACCTCTCAAAGTGCTTTCTTGGATGCGAAAAACTGAAGAAAACGTACCTGGTTTGAATTTTTAATGACGGACGAAAGTTTTAGAGGCTGTGTCTCAATACAACGAGAGGTCAAATTTATATTTAAACGTGCAAAAATTACGGATGAAATTTTTGGATTCAGTGTGCAAATAACCTTTACACTCTAGATCTTTCGCACATGTTTACTTATCCATGCATGAATCGCACATGCTCATCGAAAAATCTAAGTCCACCCAATTAACTCTCCAACAGGACATTTCTACGTAGTGTTGTAGTCTTTTTCTTGCTGCGTGTAACAGTGGCGCCTGCAGGTGTACGGCTGTACGCACAGTGCGTACCATGAGAGGGCGCGAATTAATGCCGCTTTTAAATTTTTTTATTACATAATTTACATTGATTAATAAACAGCGTACACTACGATACATTGATAAAGCAAGAAAGAATAACAACAAATAAAGGTGTGTGTTTTAAAGTATGTATGTACTTGCATGGTGGGAGATGGGTAAAGAAATCTATTGGCTTTAGTCTTACTGGTGGATTTTCCGCACCTAAAAATCATTGTTCAGATAGGTATTGTTTTAAAACAAGGTTAAAATGAGTAAACGCTCTTTAAAACAGCAAAACTTAATTGAGACATTTGCCAAAAGGCCTAAAACTAATAATACAAATACCGCAGTCTCATTATCAGCACCTGAGTCGGGGAACCTGTCTCGTTCATCAGACAGATCAGATCCAGCTGCTGCGCGGCCTCCTTGCATGGAACAGCTATCATTCAAGGTGTTTTAAACAAGTTTATCTGACAGGCTGGCATAAATAAGCAGACATCTCCTTTCTCACGAGTTTCTGAAGTGTCTCACACTTTCAACCGAGTTTGTTCCACCGAGGTAAATGTTCAGTGTTGTTGCGAATATGCGAATTTGTAAACATCTGTCCTGCTCTTTCACATTATTTGATTAAATTAATTAAATTGTAATTGACCGGCGCAACATGGGAAAACAGTATAATTTAGGCCCCTGTAAAACTGAACATTTCACTTTAATTTTGCCAAGATTATTATTTTATTATAGTTGAGTTCGTGGTTCGGCATTGTTAAAGCATATTGCGGGTTTTGAAGTACTTCAAATGTTATTGGTTCTTCTACTTTATTTAGAAGATAACTGACCAAGACAAATACTTGAACAAAGAGACAAACAATAAACGAAATTGGTTTTAAAAAGACATTATTTCTAAGAAAAATAGGCTACAAATTTTATTTTTGTTTGAGCCCGTCCACTACTCAACTGTGCGGGTGGATGATTTTCGGTCAGTGGAAAGTAAGGATTTAATTAATGCTTCACTAATTGTATTTTATCACAATTTTCTGTCATATATTTGCAAATATTTTAATGTCATAATTTTAAAGATTACGTCTTGAGCGTCTGATTTTTCCTTGGTGCTGATGTGCTTTTATTCTACATTTAGATTTCAGCAAAATATTAAAATCAAAAAGGAAACAAGTTATGTCATAACGAATGCCCTTGAATAATGCAGCCTTTGACAGCAAGCATCAGTGTTTCTTGACATGACTGGTGGAAGAGGGCGGGGCGGTGCTGAATTTGTGCGTACCTTGGAATAAAATCCTGCAGGCGCCCCTGGCGTGTAATATCGCTAATGTGCTGTAATGGCAACGCTGTTAAAATTACACCTCATTTTCATATTTTGTCCAAGTGCATCCATAATGTTCGGAATTTTCATTTTGGTGCGTCCCCCTAAAAACACGCATGCCTTCACAAATGTTAAGTTATTTTCCCTCTTCCCAG
Seq C2 exon
ATCGAGTCAAACCTGAGTAAAGAGATGGAATCTGTTATAAAGGACATTAAAAACACCACACAGAAGAAATACATGGATTATGGGAAGAACCCTGGGTCACCTGACAATGACTTCCTCTTCATGTACTCCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508:ENSDART00000129091:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(34.5=29.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]