MmuINT1023502 @ mm10
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83792542-83800136:+
Coord C1 exon
chr17:83792542-83792764
Coord A exon
chr17:83792765-83800049
Coord C2 exon
chr17:83800050-83800136
Length
7285 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
ATTTTTCTTTCTCTCATCAGATG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GACCCGCGCGCAAGAAGCCACATGTCCCGGCAGGCCTTGCAGGGCATGCCGGTCCGGAACACCGGAAGCCCCAAGTCTGCAGTGAAGACCCGCCAAGCTTTCTTCCTTCGTACTACGTATTTCACAAAAATTGCTCGTCAGGTCTGCAAAAGCACCCTGCGGCTGCGGCAGGCAGCGAGACGGCCGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAAT
Seq A exon
GTAAGACGCTTTTCAATTCTTAACCTTCCGCGTTCCGCTCCTTGCCATCCTCTCTCTCCCTCGCTCTCTCTTTTTGTTTGTTTGTTTGCAATAAACATAAGTTCTTGTGTACAGCCTTTGTTTTTTTTTTTTTTTAAACATTGTTCTTGTCTGCTGCCATTTATATCATGCCACCCTGAAAAACAACATCAAAATCCCTGTAAATTTTCAGAGTAGCACTAATCAGAAGGTGGGGGAGGTGTCCGGACCGAGCGGGCTTTTGTGGCACAGTTGCCCAGAGGGACCTTAAGTGATGCACGTCTACCAATTTGGTAGCGTGGCAGTGTAAACTCAATAAAAGCTCTAAGGAGACATCACAACCCAGTCTTAAGGGTTCATGAGGTTTTAATAAAATTTGCTAATTTCTACTAGTTAGGAATTGTATGTCTTGACAAAGTCTTCCCAGGAGCCTTGCAACCATCACACGGTAGGAGACACAGTGCTTCCTAAGGAATCCTGTATGTGTGAGTGTAGTGAGTTTTAAGTCCCCGTGAGAACCCTCTTTAAGAACACCCCACCCCCACCCCCAGCAAACACGTGTGAGTTTGCCCAGTCAGAGCCTGTTGTGGGTGAGCGCTCTCTGTCCTGCGTGAGTTCCATTGCATGGTCATACATTACAGTCAGCGTCTCTGTGACTTACTCTCTTTTTTTCAGCACATCCAGTCTCTCTCATGTTTCCTTTTTGTTGTTGCTGTTGTTAAAACTAAGGTTATCTGCTCCGGGGAGCTGTGGGCTCTTCTCTTATTGCCTCATGTCTGAAAATGTACACATAATCGGTGGTAGCTTGGAGTCATACATGGCTGGTAGGGCCATACAATTTCTTTTAAATGGATTTAAAAAAAAAAAAGAGGCAGATTAGAAAATCTTAAAGATATTTGGGTGTGTGCTTTCTCTTTCCTTTTTTCTTTTTTTCTTTTTTGTTGTTTTTTGTTTTGTTTTGTTGTTTTCTTTTTGTTTGTTTGAGGTTGTTTTTTTTGCTTTTTTTGTTTTGATTTTCGAGGCAGGGTTTCACTGTGTAGCCCTGGCTGTCCTGGAAGCTCACTCTGTAGACCAGGCTGCCCTCGAACTCATGAGATCCTCCTGCCTCTGTCTCCTGAGTGCTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTCAGGTGCTTTGTCTATGAAATAAAAACTGATTACGAAGCACAGGAATCCTGGGAAGGTAGGGGCCGGAGAGTCAGGAGAGTCAGTAGATAGGAGAGTCAGTAGATAGTCAGGAGAGTCAGTAGATAGGAGAGCCAGTAGTTGAAAGTCATACAAGCTACACAGGGAACTCAAGACCAGCTTTGGTAACATGGAAACCTTGTTTTTAAAAAAAAAAGCCCGGGGCTGGTGAGATGGCTCAGTTGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGATGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAGTAAAATAAAAAAAACCCCAAAAACATAAAAGCATATCAAAGAGGATGCCCATAAAAGAAATGTCGGCTGTAAAAGAATTTCTCATTTATAAAAATGATTTTCAGCTGAAAGTTGAAAGTTCAAAGATTTTTTTAAACTTAAAGGTAAAAGGCCTATAAGAAGAGTGAAAATCGGCAACCATTCAGTCTCCCGAGTGGAGGGAGCCGGCCGAGCTCTCACTATAGTTGAGAACTCAGGGCTATCTTTGGTTCTGTCCTGGCAGTTCTGAGGTCAAGGACATGCTATTTTTTCACCCATTTTAAGGAACTAGAAAATAAATATATCCACCCAAACTGTTTAAATGATTTAAAACACGTTATTATATAGTTTCTTAGGAGGAATAATTGAAACATTTCAGACAGAAAATTACTGATTGGCCGGGGCCCGGTATCATCTTTGTTTCTAGCAAATGGCAGAGAAGCTATCAGCAGAGGGATCGGCCTCCGTGCGGGCGGCTTTGCTTTTGGCTCTTGGGTGATTTTCAGTGTATTTGCACGTCATCTTTGCGCTGAGTATTCTCAGCAAAGCGAGTTTGTGTCACTTCATTCCAGTCTTATCGTTTGAAATCCATGCTGCTAAGAATAGAGTCAGGGTTAAATTGTCTGTATTCTGTTTGTTTGAGGCATGGAAAATAATAGGGGAAGAGCAGTAGTTTGTTGCGATGAAATTCCAAAACTTAATTACTTTCGTCTTTATCTTTATTGAAGTACATGGAGAATCAGAGACTTAGAACAGTTACAACTTAAAATTCCAGTATTGCTCGCTTGTACTGCCTGGGCTCCTCTCCTCGCTTCTAGCTGAGTTTGGCTTTATCTCTTCTATCTGAACATTCTTATAACCTCTTCAGTAGACGAGTTTATCTTAGCTCTGGAGTAACCTAATGTCCCTAGGCAACTGAGTCTGAGATCCATCAGAAACGAATGGCTGTATGTGCGTGCGTGCGTGCGTAAGTACGTAGGTACTTGCGTGCGTGCGTAGGTACGTAGGTACTTACGTGCGTGCATGCGTGAGTGCGTGTGTATTACTTCATAAGCTTCCCTTGAAGGCAGTGTTGGCTGCCCCATCTCTATAACACAAGGGTTACTGATAATGGTATAGGGCTGTTGTACTACTGTAAGGTAGACACTTGTAATTCTAAAGAACTGAAGAATAGAGCTGTCGTAGATACATTTGGAATAACAAGTAGCATTAGGGAAGGAAGGTGGTTCCCTCAGTACAGCGCCAGAGCCAGTGTTGTAGGGATTACAGGGTATTCGGGTGGGCGCAGAAGAGGGAAGCCACCGAGGTCGCAGCCCCAGGGAGGCATGAGCAGCACCTAAGAACTTGACTCAGTAGGTAAATCCTACTTTCAGATTGGTTATGGAAGTCCCAATGCCGTAACCTTTTATGTTCATTAAGGAGCATGTAGTATAAGCCGGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGGGTTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAACAAACAAACAAAAACAAAAAAGGAGAATGTAGTACGGCTTGCAATATTGTAAATGGGGATTTCGCAAGAATTAAGAGCTGCAGGAAAGGGAAGTGGGAGTCTAGGACAAAAATGGGATGAGATTTTTTTTCCATTGTTCATCTTTTAAATGAATGCATTTCCTATTAAAAAATATAAATTATAAACCTCCCAGGAGGTGCCTATAATCTCAACACTGAGGAGGCATAGGCAGAAGGGTTCCCACTCCTTTGAGGCCAGCCTGGGCTACATAGTGAGTTTAATACCAGGCCCTATCTCAGAACAAAAGTACACATATATAGAATACATATGTATGTGACAAAACATTTTAAACCTGAGCACAAATGTTTAACATTCTGAGTCCTCACACTGAAACTCACTTAAGGACCTCAGCAGCTCTTCAGAGACAGCTAAGCCCCTAGCAGAGCAGGTGGGGATTGGCCTGTCCCCCCTTTTTGGCCTGCCCCCACCCCCCTGCCAGCTTGCAGAGGTGATTAGTAGCACCGAATCCAGAGACCAGCTGTTTGAAGATGTGAATTCAGCTTTGCAAGTATCCATGGGGTCTTCAAAACAAAATTTATTGTTAGCAACTGCACACACTTTCCTGAAGTGCTCAGCTCGAGAGCAGCGGGAGGGTTGTTCTCTTGCTGGGTTTGTTTGTTTTGTTTTGTTTTTAAATAGTGTTTGCCTTTAATAGGAATTTGTTTTTCAATGGTTACTTAAATTTAATTTTTCTTACATTTATTTTATTATATGTATATGAGTTTTTGCCTGCATGTATGTATGGCACATGGAAGTCAAAAGAGGCGGGGTCAGATCCCCATAGGCCTAGAGTTACAGGTGGTTGTGAGCAACAATATGGCGGCTGGGAACCTAAGCTGGTTCTTCCGCAAGAGTCACAAGTGCTTGTAACTGCTGTGCCCTTAAACTTGTAAGTGCTCTGTCCCTTAATTTTTTTTTTCTTTTAAGTTATGGAAGTGGCTTCAAATCGCATAATCTTTTTTTTTTCCCCTTTCTGATAAATATTCTTCAGAGGCAACTACTGTCGTGATGCGTTTTGAATTTTAATAGCCATTGCCTCCTAGAAACCCAGCTTATATTCCCAACTACTATCTTGAGTGGACGAATGCCCACGGCTGAAGAAGCTTGGCAGAGGTGTACCCCACCTTTCCCTCATGCAGCTGATGGATGAGACATAGCTGCTAGCTTCCATCTTGCGTTTTACTAGTGAAACAGAAATCATTGCGGAGATCTGAAAGGCATTTACATTTCTGGTCAATTATGTTTGCTCCTTTCTGTTTTCTATTAGAAGTCTTCCTGAACTCTGGAAACCTTAGCAAGGGTACTTCTAGATCTGTGGTGCTAACACTCCCTTCCTATTTTGTATTTGTCTGTACTGTATTTTCTAACACCCCCACCCCGTCTCTCTCCCCCACCTCAGTGGGGGGTGGGGACAGGGTCTCTATGTAGACCAGGCTAACCTCAAACTCACAAAGACCTGCCTGCCTCTGCCTCCAAAGAGCTAAGATTAAAGGCATGTACCACTACACTGGGCTAAACGTTTCTATCAAAAACTGAGTCCTCTGTTTTGTTTCTATTAATGATTTTGTTTGACAGAGATCTGAAAAGACCATGTTAGTTTTGTTTTTTTTTTTAAAGAATTTTACTTTGTATGTGAGTGTGCGTGTGTTTACTCATGTGGAGAGCAAGGTGCAGAAGCACACATGTCAGAGCATGTTTGTGAAGGTCACAGGACAGCTGTTGGCCCTCGCCTGTCTTGTTCCAGGCAGTGTTTCATAAACCAGACTAGAGGGCTCGTAAGCTTCTGGAGGTTCTGCCTTTATCTTCCATCTTCCCCAGGGGCGTGCTTAGATTGCAGAATCCACATTTCAGGTCATCAGACTTGTGCCCCGAGCGCCTTTACCCACTGAGCCATCCTCCCAGCCTTTGTGTATTTTAATTAATCGTGTATATTTTACAGCTTTTCTATGTTATAATCTCCCTATGTTATAATCTCTTCTATGCTATATACCCCCAGTATTTCCAGTCCATCAGAGAACAGGTGGCATGAACGTGTGGCTATGCAATGCATAAGAAAAGAGCTTAGTGCCCAGTCAGTGACATGAGTGAGGTGCTGCTGTGCCACCCTGTCTGGGCAGTTTTGGTCCCCTCAGGACAGTCTTCAGTTGCTGCCTTTGTCACATACTTGTAGTGGCCTCCTCTGTGTTGAGCTAGAGGTGGTGAGTAATTTGGGAATCAAGGACCGACAAAGCTTGGTGTCGCCTGGCCTGTTGACCAGGATGCAGCAATATTGATCATACAGTGAGGTTTACAGACGTTCCTGTGTGCCAAATGTGGTTTTCCTACTGAATGACTCCTGTTTTTCTCATGTTAAAGCCAGGCTAGGCCATCTTAGCACTTTTCAACCTAATTTCTTTATAATTGACTTGTAATTCTCAACACCAATTACTACTCTCTTTAAGATAGATGTAGTGAAATATGGGTCCTGCCAGAGAGCTTTGATCTCCAGAGTGTACTTGGAAACTTTCCCCAGGAATGTGACATCATTGGCGAGACTTAGTCTGAGAAATCAGAGGCAGTTTGCTAAGCAGAAACCCGGTTGGTGCAGTGTCAGTGACCATCTTTGGGCTTGGTGGCTCTTGTCAAAGTGATGATATAACATCCCGTGTCAGTCAGTTGTAGCCGCGTTGACAGTTTTCCTGGTGTTCTTGCACAGCGTATCTTGTTACTAGGACTGTGGAAAGTGCGTTTGTCCAAAATGCCGAGGTACTTACCAAGACGATTCACTCAAGCCACTTGAATTAATGGAGAAGAAAACAAAAACAAATCCCGCTCGTCTCTTTCCCAAGCCTGACCAGAATTTTAGGCAAGGTAGACATAGGAAGAAGGAACGTGGTGTCACTGCGTGGTGGTTGGACCCGTGTTCCATCCTTGCAGAGTATATCGAAACACACTTGCTAAAGATGCGCTTGCTTCTGCCTCCGCCTTCATTATCACTCAGTAGCAGGTGAAGAGCTTCGCAACTTAGTACTGCTTGCAGAGGTAACCATTGGAGCAGAGGGGAATAAGGGTCTTTAACAGTGTCAGTGGTTGCATTGTAGGTACACAGTGCTTGTGGACAGGCGTACACTCCTGGGGTCTCTAAGCTTCCCCGAAGCATGGGCCTCTGCAGTGCGGGCCTTGTCTATTTTAATGTCTTTTAAATGCTATTTCCTCCGGCTGCTTAGTAGTTTTTTGTTTTTTTGTTTTTTAAAAAACATTTCCTTGATGAAAAAGGACTAGTGGCCTGGAGCAAGCTCAGTCTTTCTTTGAGGTATTTGAGGTTCCAAATTGAAATGCAAAGAACACCTATGAGTGTCAAAGGCACTGACCCCATCTTGATGACAGCTCCTTTAAAGTGCGGTGTTTATATTATATGTTTTATTTCCTTTTCTGAACTATTTTATGATATGGTTTGAGGCAAGGGAACTTTCTTGGTCAGTGTCCACCTTCACATTGTGACTGTTGGGTGTACACACATAGGGACTGTTAAAGCCTCAGCCCAAGTATCATTTTATGATGGAGCCAAAGCAGTAACAGAACCAAATGACTTTGCTGGGCCACCGTCTGATGCAGACGAGTTTCGTTAGGATAGGCCAAGACTTCAGAGGGCAGTTGGCCCGCTCCAGCTAAGCGGAGAAGCGGCCGAGTGTGTTGCCTTGCCAACCGTTGGTTTGGTTTGTTTCAAGCCGTATTAATCTTACATTAGAGTATGTCTTGAGTGTTGTTCTATCACAATGTAGAAATGTCACAACTAAAAAGGAAGCCCATTTCCATCTCTCTTCAGGTGAGCACACATGGTATGTGTGAGGCCTACACTTGATTGGCTTTAGCGTGAGCGTTGATGTGACCCCCTCCTTCAGTACAGGGATCTGAAACTCAAAACAGTTTTTTCTACCCAGAGGAAGTAGTGGGAACAGGGTGGGTGCTCTGCATTTCCTGCCCCTCCACTCCCTTACCCCCACCCCCCCACCCCCCAGCACCCTTTATTTCTGTGTTGTGTGTTAAAGGTAGAAGAAACCACCTTACTGGTGTCTCCATTTTTCTTTCTCTCATCAG
Seq C2 exon
ATGCAGACAGACATGCCGAACTTTCTGGAAGCCCACTGAAAAGCAGAAGCACCAGGAAACCTTTGTCGTGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817:ENSMUST00000067826:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.769 A=NA C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types