RnoINT0094993 @ rn6
Intron Retention
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:7006422-7013782:+
Coord C1 exon
chr6:7006422-7006644
Coord A exon
chr6:7006645-7013695
Coord C2 exon
chr6:7013696-7013782
Length
7051 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
ATGTTTCTTTCTCTCCTCAGATG
3' ss Score
12.74
Exon sequences
Seq C1 exon
GACCCGCGCGTGAGAAGCCACCTGTCCCGGCAGGCCTTGCAGGGCATGCCGGTCCGGAACACCGGGAGCCCCAAGTCGGCCGTGAAGACCCGCCAAGCTTTCTTCCTCCATACTACGTATTTCACAAAAATTGCTCGTCAGGTCTGCAAAAACACCCTGCGGCTGCGGCAGGCAGCGAGACGGCCGTTTGTTGCTATTAACTATGCTGCCATTAGGGCAGAAT
Seq A exon
GTAAGACGCTTTTCAATTCTTAACCTTACACGTTCCGCTCCTCGCCATCCTCTCTCTCTCCCTCGCTCTCTCTTTTTGTTTGTTTGTTTGCAATAAACATAAGTTCTTGTGTACAGCCTTTGTTTTTTTTTTAAACATTGTTCTTGTCTGCTGCCATTTATACCACGCCACCCCGAGAAACAACATGGAAACCCCTGTAAATTTTCAGAGTAGCGCTAATCAGAAGGTGGGGGAGGCGACCCTACCCAGTGGGCTTTTGCGACACAGTTGCCCAAAGGGACCTTAACTGAAGCACGGCTGCCTATTTGGTAGTGTGGCAGTGGATGATAAAAGGATGATAAAAAAGCCCCTAAGGAGACAGCACAATCCAGTCGTAAGGATTCATTGGGTTTTAATAAAGTTTGCTAATTTATACCAGTTAGGAATCGTAGGTCTTGACAAAGCTTTTGTCTTCCCAGGAGCCTTTGCAGCCATCATACAGTCTGTAGGAGACACAGTGCTTCCTAACCAATCCTGTGTTTGTTAGTGTAGAAATGTTGAAGTCCCTGTAAGGACCCTCTGTAAGAGCACCCCCGAGCATCCACGTTTAGTTTTCACCAGGCCCCACCTGTTGTGGTTGAGCGCTCTCTGTCCCGTTTGATTTCCATTTCATAGTCATCCGTTATCAGTCTGGCATCTCTGTGGCTCACTCTCGTTTCCAGCTAAGCTAGTCTGCTCATGTTTCGTTTTCTGTTGCTGTTGTTAGAACTAAGGTTATCTGCTCCAGTGAGCCATACACTGTCTCCTTAAAGGATTTAAAAAACAAAAACAAAAACAGGGCAGTTGGCCTTATGGCCTTTTTAGATTAGAAACTCTTAAAGATATTTGGGTGCTTTCTCTTTCCTTTTTTTCATTTCTTTCTTTGTTTTTTGTTTGTTGGTTTTTTGGGGGATTTTTGTTTATTTTTTGCTTTTGTTTTTTGTTCGTTTTGTTGTTTTGTTGTTTTGTTTTGGCTGGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAGCTCACGCTGTAGATCAGGCTGACCTCAAATACACGAGATCCTCCTGCCTCTACCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACTGCCCCACTCAGGTGCTTTTTCTGTGAAAGAAACTGATTATGGAGCACAGTAATGCTGGGGAGGTCAGGGTAGGAGAATGAGTAGTTCAAAGTCATCCTCGGCTACACAGGGAACTCAAGACCACCAGCTTCGGTGACATGAGACTGTGTTTCAAAAAAACAAAAACAAAAGCATATCATTATGAGATGTTCTCTCATTCGAAGAGGATGTCTGTAAACGAAATGACGACTGAAAAAGAATTCCTTATTTATAAAAATAATTTTCAGTAGAAAATTGAAAGTTGAAAGATTTTTAAGCTTCAAGGCAGGAACCCTATAAGAACAGAGAAAATCCGTGACCATTCGGTCTCCCGCATGGAGGGAGTCGACTGCTTCACATCGCAATAGTCGAGAATTCAGGCTTATCTGTGGTTCTGTCCTGGCATTTCTGAGGTCAGGGACTTGCTATTCTTTTTACCCATTTTAAGGAACTAGGAAATAAATATATCCACCCAAACTGTTTAGATGACTTAAAACTTATAACAATGACATTGTTATATAATTTTTTAGGAGGAATAATTGAAATATTTCAGACAGAAAATTAGTGATTGGCCGGGGCCCAGTATCATCCTTGTTTCCAACAAGCCGAAGAGAAGTCATCGGCAGAGGAACCAGCCTCTATGTGGGCCACTTTGCCTTTGGCTCTCAGTCGACCAGTGTTTTTGTATGTCATCTTTGAGCAGCCTCAGCGAAGTGTGTTTGTGCCATTTCATTCTAGCCTTGTCACTTAAGAGTCCATGCTGCCAAAATTAAATTCAGGGTTATCTATATTCTATCTTTTCAAATGCATGGAAAACGGTGAGGGGGGAGCACCCGTTTGTTGCAATGAAATTAAAAAATAAAAACCTTACTATTTCCTTCTTTATCTCCATTGAAGTACAGAGAATCAGACAGGACAGTTTTTACCCTACAACTTAAAATGTCAGGGTTGGTCGCTATGTACTTACTGAGCTCCTTTTCTAGCATCTAGCTGATTTTTACTTTATCTTTTCTCTTATCTGTACATTCTTATTCAGTAGATGCTTTTATCTCAGCTCTGTAGTAACCTAATGTTTATAGGCAACCAAGTCTCTGATCCATTGGAAGTGAATAGCCCCGAGCGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCACGCTTGAGAATGCAAATGTTGACTACTCCATCTCTGTAAGACACAACCGTTACTGATACAGTGCTGATGTACTTTCAGATAAGATGGGAGCTTGTAATTCTCAAGCCTTGAGGAATAGAGTCGAGGTGGATACATTTAGAATAACAAGTAGCATTAGGAAAGGAACTAGTTCCCTTGGGCACAGCTCCAGAACCACTATTGTAGGGACTCCCGGGTCTTCTGATGCCTGCCAGAAGTGGGAAGCCACCAAGCTTGCAGCCCCAGAAAAGCATGACCAGCACCTAAGAACTTGACTCAGTAGGTACGAAGGAACCAATTCCATAGCCTTTTGTGTTCCTTAAGGAGCATGTACTAAGGCTTGCAATATTGTTAATTGTGATTTTGTAAGAATTAATAATTGTAGTAAGGGAAGTGGGAGACTAGGAAAAACGGGATGAGATCTTTTTTCCCCATTGTTCATCTTGTACAGGAATGGCATAGGCAGAAGGATTGCCACTCCTTTGAGGCTAGCCTGGGCTACATAGTGAGTCTATGTACCAGACCCTATCTCAGAACAGAACCACAAGTATATAGAATTCATGTGTGATATCTATGTAAACTTTTTAAACCTGAGCACAGATACTTGACATTCGGAACCCTCACACTGAAGTAAACTTAAGGGACACATCTGCAGCACTTCAGAGACAGCTAATCCTCCCCCTCTTGCCATGAGCAGGTGGGAATTCCCCTGCCGCCTTGCCATCTTGCAGAAATGATTAAGTAGCAAGGAAGCCATAGACCAGCTATAATCCCATGGTGAACGTGAAGGTACTTTGTGTCTCTTCAAGAGATTCTGAAGATGTGAATTCAACTTTGGGAGCGTCCAAGACCCCTTGGGGAAGTTTTGGATTGTTTTTTGTTTTGTTTGTTTTGTTTTTTAGATTTGCAACAAAAGTTATTCTTAGCAATCCCACGCACTTTCCTGGAGTTGTCAGCTTGAAAGTAGCAGGAGGGAAACCATATACTGTGGCTTCTCTTGCCTGTTTTTATAATGTTTGCTCTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTGCCTTTAATAGAAATTTGTTCTTCAATGGTTACTTAAATTTTAAATTTTTTATGTATATGAGTATTTTGCCTGCATGTATGTATGTGTACCATATATATGTATGGCACATGGAAGTCAAAGCCCATTGGTCCTAGAGTTACAGGTGGTTTTGAGCAACAGTATGGCTGCTGGGAACCTAACCAGGATCTTCTGCAAGAGCCACAAGGGCTTGTAACTTCTGCACCCTTAAACTGATAACATGTAAACTGGTTACTTCTATGTCCCTTAAATCGTTCTTTTCTTTTAAGTTGTGCAAGTGGTTTCAAGTCACGTAGCCTTTTTCCTTCCTGATAAATGTTCTTCAGAGGCAACTGCTGTCATGGTACATTTGAATTTTATAGCCATATTAAGATTAAAATTCGGAGACCCAAATTAGGAGTCTCCTAAAAATCCAGTTTATATTCTCAACTACTGTCTTGAGGGAAGGAATGCCCACCTCTGAGGAGTCTTGGCAGATGTCCCCCATCTTTGACACCCTGTGCAGCTGATGGATGAGACAGAGCTGCTAGCTTCTTGTTCTCCTTTCTAGTGACGTAGAAACCACTGCAAAGATCCAAAGGCACTTAGACTTCTGGCCACTTATTTTTGCTCCTTTCTGTTTTCTGTTAGAAGGCTTCCTGATCTCTGGAAGCCTCATCTTAGCAAGGTTACTGCCGGATCTGTGGGGCCAACTCTTTGACATTGTGTTGTATTTCTAAATCAATCAATGTGTGTATGTGGGGGGACGGTCTCTATGTAGACCAGGCTGACCTCAAACTCGAAAAGATCTGCCTCCAGAGGGCTAGGATCCAAGGCATGCACCACTACCCTGGGCTAAACATTTCTATCAAAAACTGCTTTATAGCACCTGAGTTCTCTGTTTTGTTTCTACTGATGATTTTGTTTGACAGAGAGATCTGGAAAGAGCATGTCAGTATTTTTTTTTTTTTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTACTCGTGTGGAGAGCAAGGTGCAGAAGCACAGGCCACAGCGTGCTTGTGAAGGTCACAGGACAGCTGTTGGCCTTTGCCTGCCTCGTTGGAGGCAGCATTTCATAAGCCAGCCTCAAGGGCCTGTGAGCTTCTGGAGGTTCTGCCTTTATCTCCCATCTTCCCCAGGAACAGAGACACACTTAGATTGCAGAATCCAGATTTCAGTTGTCGGACTTGTGCCCCAAGTACCTTTACCTACTGAGCCATCTTCCTGGCCCTCATTTGTGCATTTTAATTAATCATGTGTATTTTGAAGCTTTTGTATTTAATAATCTCCCTCCACCTCCGGTATTTCCAGTACATCTGAGAAAAGATCAGAGGCAGGCATGAATGTGTCAATATTCGATGCATGCCCTGCTATAGGAAGCTCAAGAAATGAGCTTATGCCCAGTCAGTGACGTGAATGAGATCTTGCCAGTTTGGGTTCCCTCTGGCTTCTGTGCGTAGTCCTCAGTTGCTTCCTTTGTCCACACACTTGTAGTGGCCTCCTCTGTGTTAAGCTGGAGATGGTGAGTAATCTGGGGACCAAGGACAGACAGCTTGGTGTAGCCTGGCCTATATAGACCAGGATGCAGCAATATTGATCGCACAGCGAGGTTTGCAAATGTTCCTGTGAGCCAAATGTGGTGTCCTACTGAACGGCTCCCACGTTTCTTATGTTAAAGCCAGGCTAGACCACCTTAGCACTTTTCAACCTAGTTTCTTTCTAATTGACTGATTACTCTCTGTACTAATTACTGTCTTTAAAATAGACTTACTAGTGAAATGCAGATCCCGCTAGAGAGCATTGAGGGGACTTGTAAACCTTCCCTGGGAATATGACACAATCGGCAAGAGCAGTCTGAGAAACTAGAGGCAGTTTGCCGCAGTTCCAAGCGGAAACCCAGTTTGCATGGTGGCGATGACCGTCTTTGGGTTTGGTGGCTCTTGTCAAGGTGACGATAACATCCGGCATCAGTCCGTCAGTTGTAGCCACATTCACAAGTTTCCCTGGTGTTCTTGCAGACTAAAGGGCAAAGTGTATCTTGTTGCTAGGACTATGGAGAGTGGCTTTGTCCAAAATACTGAGGAATTCACTCGGGCTGCTTGTATTAATGAAGAAGAAAACAAAAACAAACGAATGCTTTCGCTTGTCTCCTTTCCCAAACATGACCAAGATTTTAGGCAAAGTAGACATAGGAAGAGGAATTTTGGTGTTAGCGCTCGGTGGTTCCACCGGTGTTTCACAGGGTAATGCGCTTGCTAGAGATGTGCTTGCTTCTGCCTCTGTCTTCGTGGTTCTTCAGTAACAGGTGGAAGCCTCACGACCCCTTGCAGAGGCACTCATCTGAGTGGAGGGGAAGTTGTCAGTGGTAGCATCATGGGTAAACAGTGCTCGGGGCACAGAGTTACTGGGGCTTCTAAGCTTCCTGCAGCAAGTGCCCCGTCTATTTTAATGTTTTTAAATGCTATTTCCTCCATCTGTTTGATAGGGTTTTTTTTTTTTTTTAATTTCCCTGGTGAAAAGGGACTAGTGGCCACAACAAGCACAATCTTGAAGTTATTTTAGGTTCCAAAGTGGATATGTTTTGACGATAAATGCAAAGGACACCTATGGGTGTCAAAGGCAACTTCTGTCTGTGTGCCTAGGACAGGTCTCAGCTTGAAAGAGGAAAAGACCCTTACTAGGCTCAAAACCCTGAGGCGCCATTTGTCATACATTTGGAGATGGGGCAAAGCATAAACATTATAGACCTATATCAGCTAAGGCAATTGATGAGCCTGTGACAATGTCTACTTTAACAATTCTTTTTTTTTTTTTGGTCCCTCGATCTGTGTTGACCTCAGCTCTATGGTATGGTAGTGTTACACTGACCCTGTCTCGATGACAGCTCCTTTAAAGGACAGTGCTTATGTTGTACACTTTTATTTCCTCTTCTGAAAGAAGACTCCTTGGTCAGGGCCCAGCTTCACATTGTGGCTGTTGGGTGTACACGTACCTTTAAAACCTCAGCCCAAGGATCAATGTGTGAAGGAGGGAACCGAGGGCAGTGACAGAACCAAATGGCTTTGCCCGGCCACCATCTGAGGGAAGCCAAGGCTTCTGAGTGAGGCCCACTCCAGCTAGGCCAGGAGGCGGCTGAATGTGTTGCCTTGCCAACCATTGGCTTGAGTTGTCTCAAGCCACATTAACTTTACATTAGGATCTGCCCCACTTTGAGTGTAGTCTGAGTATTTTTCTGTCATAATGTAGGAATGTCACAACCAAAAGGGAAGCCCATTCCCATCACTTTTCAGGGGAGCACATGGAGTGTGTGAGACCTACACTCCGTCAGCTTTAATGTGAGCATTGGTGTGAGGCCCCCATTCAGTACAGGGATCTGAAACTCAAAACAGTTTTCTCTCTCCAGAGGAAGTAGCGGGAACGGGGTGGGTGCTCTGCATTTCCCCCCTCACCCTGCAACCTCCCCCAACCTGCACCCTTTATTTCTGTGTTGTGTGTTGAAGGTAGAAGAAACCGCCTCACTGGTGTCTCCATGTTTCTTTCTCTCCTCAG
Seq C2 exon
ATGCAGACAGACATGCTGAACTTTCTGGAAGCCCACTGAAAAGCAAGAGCACCAGGAAACCTTTGTCATGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685:ENSRNOT00000061921:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]