MmuINT1035816 @ mm10
Intron Retention
Gene
ENSMUSG00000078496 | Zfp982
Description
zinc finger protein 982 [Source:MGI Symbol;Acc:MGI:3701121]
Coordinates
chr4:147507586-147510879:+
Coord C1 exon
chr4:147507586-147507640
Coord A exon
chr4:147507641-147510752
Coord C2 exon
chr4:147510753-147510879
Length
3112 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TAGGTAGTTTTCCATTACAGGGT
3' ss Score
4.49
Exon sequences
Seq C1 exon
AGACCCTGGGAGAAGGACAACAAGAATGAGTGTGTTTCTGGTAAATACACCACAG
Seq A exon
GTCAGTGTCCTTTCCACATTTCTTTAAAAAAAAAAATCTCTTTTTATTCAAGTCATCCAAATGTTTTAATCTCTATATGTGGAATGTTATCTAAGGGCTTATTCTCTATGATCTATATTTTCTTTTGTAATAATGAGAACTTAATATTTTTCCTTTTCATGCATATAGTGGCTTTATATTTTACCTTGAGTTTTATATTTTGAGGGTATATAATTCTCTTGGACTAAAGACCTGCATGTCTCAAATAGTATCTATGATGCTCAAAGAACATATTAATGGATATTTTCTTTTTTTTCAATTTATTTATTTATTATATGTAAGTACACCATAGCTGTCTTTAGACACTTCAGAAGAGGGCGCCAGATCTTCTTATGGATGGTTGTGAGCCACCATGTGATTGCTGGGATTTGAACTCAGGACCTTCAGAAGAACAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCTAGCCCAATGGATATTTTCTATATTGAATAAGTTTTGTCCTTTTGTATTAGTGTGAAGTAAGGTCTCTTGTGCCACATATATGGCATTTCAGGGATGGTCAGGTTTCTAGCTTGTGAATGAGGATATAGAAATAAGTATAAATTCACATCACTAAAGAAGATATGAAAGAGTAGAATTTGTAGAAGGTAAAATTATAAGAGATCTACTGTCTTGAATCCTAATAGTAAATATATTATTAGCTCCCTAGGGTCACAGATAATGGAAGGAAAATGTCTTTCTTACCATTAGTGTAATTGTGAGCTGATATAGATTTCCGTATTCTGACACTTTTTTCACACCTCATGTCACATAGTAATCAATGTTGACACTGGAAATCTATTTGTCTCAAGAGAGATACTGTCCCTGTGGAAAATTCACAGTATAGAAATAGTTATTTACCTCTCTTTTTGGTTTGAGAAATAACTTTAAGTCCTATTTTCTTCACCTTTGTATTTCATCACATAAGCTATATTAGTAAAATTTTTCTAGAGAGGATAACTATGGTGCTGTGCATAAACCATCAATTTAGAAACATAAATGAATGTCCTTTCTTATTTTTTGTCTCTTTTTCTTTAGAAGGAAAAGGCTTGATACAATCTGTGATAATCTTCTCCAACCAAGCTTTGCATTACATAGGGAAAACTGAAGTGTTATGTCAATGTTTCTATTTTTCATTATGATATTATTTTCTTTAAGTCCATAAGTGTATATCTGAAGGTTTTTATGTACAGTGAATGATACTCTATGCCCCTAAAACCATGAGTATAGCACCAAACCCTGGGGACAGACATAATAGTGAGCTGCAATATATTTAGAGAGAATTAGGTTAGTTTTTAAAGTAGAAACAGCAAGTACCCTTTACTCTTTAGTCATTTGTTTATGGCACAGGTTTATATTTTTGAAGAATATTTTCAATAAAGACAATATATAGTCTGTATATTATAATTTTTGATAAACAAAGGAAGAAAGATAGATCACACTTCTCTATGAAAAGTGCAATTCTGATATACATATGGTCAAACTCTGAAGCCAAAAATTTATAATTTGAAGATTGAAATTTTCAGTTAACTTAATACAATGAGGGATAGTTCATTAAATTGAAATGAATATTTAATATAATTCTCCTCAATTTAAAAACAGAATTTGACCAAAAAATGATTGTACTTCATTGGAATGCATTGTCACATATGATATATGCTTATACATACATATCAAATCATTATATAGTGAAAAACCATATGGTATTATTGAAATTATTGTTATTATGATTATGCATATTGATTGTACCAACATATGTAAAATGTTAAATAATTTTAAAGCTCTCTCATACTATTTTTTTCTATTTTATGGTTTTGAATACATTCTCATAATGTAATTTCCAAAAGCATTTCGTTTTCTGTGTCTTATGGAACGTTCAGTGTATGATGCCCTGATGTTCAAGTTCTATTGTATTTAAAGAAAAAACTTTAACATTTAGTTCATCCGTTATTTCTGCATTTTAGTATTCTACCTGTTTGTCCTAGAAAGTGTGTCGCATTGAACTTAGGCCTCAGGTTGTCAAATGGACATGTTGCAATACAGATGTGAGACACAGCTGCACATAAGACTAAGCTAGTGTTTATATTTAAACAAAGTGGACATTGTAAAATTTGAAAGCATATTTTGTTATCACAACTTGACACTGGGATCTAATGGGACACTGGGATTCTGATTATTATCAACCCATATTTCATAAAGGTACATTACTGCATCTAGACATCAAAAGTACATGTTATATTCTATAAATGTTTACTGCTTTTGAAATTATATCATGCATTCTCAGAGAAAAAGGAATATAAGGAAGTCTATTAGTAGTTTAGAAAGTTTCTTTGAATGAAGTTAAAGTTCTTTTTTTCTTCTATATATGTTGCTTACATTTGCCTGAATGTATGCATATGTGCTATGTATTCCTCCTGTCCGTAGTGTTCAGAAGAGATCATTGGAGTTTAAAGAACTGGGTTTAACAATCTACTGTTTAGTGCCACATGGGTGCTGGGAATCAAATTTCATAATACATGACATTAAAAGACAGTATACAATCCAAACTGCACACCAAAATTTTTGAAAAGAGTGATGGTGGCAAATGTTAAATGTGCTGTGAAGGTCTCAGTAAATCACAGAAAATTCTTGAAGATGAGAGCATTTCATTTTTCTTTTTTCTTTTCTTTCTTTTTAATTAGAGAAGCTTTTAAAATGTGAGCATTATAATATGTCATTCTGTAGATTGTCAGTAGAAGAGCAGCAATTTGTATCTAGAGACACATCTCCCTAACACTTTTCAAAAACATTTGTAGTTCAATATTTTCCTTCCTAATCTGAATAAAAAAGGATATGTTTTTTAAAAATTTATTTATTATTATATATAAGTACACTGTAGCTGTCTTCAGATGCACAAGAAGAGGACATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTTGAACTCAGGACCTTCGGAAGAGCAGCCACAAAAAGGATATCTTAATTACTTCTTGTTTTTGAATATTGCAAAGCATTTTTGTCCCATATCAAATAGGTAGTTTTCCATTACAG
Seq C2 exon
GGTCTGTTAACCTTCAAGGATGTGGCCGTGGAATTCTCACTGGAGGAATGGGAACGTCTCAGTTTTGCTCAGAGGTCATTGTACATAGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078496:ENSMUST00000105721:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF0041217=LIM=PU(41.3=44.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types