RnoALTA0020282-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3349750-3351335:+
Coord C1 exon
chr3:3349750-3349988
Coord A exon
chr3:3351145-3351193
Coord C2 exon
chr3:3351194-3351335
Length
49 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCCCCTCTGTCCAGGGACAGTGG
3' ss Score
-0.1
Exon sequences
Seq C1 exon
GTATGGGGTGTGCCTCATTGGGCTGAAACGTGAAGAGAACAAGAGTATCCTGCTGAACCCGGGGCCACGGCACATCCTGGCCGCCTCTGACACCTGCTTCTATATCAATATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAGCAGGAGGAAAAGCAGAAGAGGCGGGGCCTGGCAGGGCAGGCACTTTACGAAGGGCCCTCCCGGCTCCCAGTGCACAGCATCATCGCCTCTATGG
Seq A exon
TGGCCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAG
Seq C2 exon
TGGTGGGGGCGGCGGCAAGCTGACTCTGCCCACTGAGAACGGCTCTGGCAGTCGGCGTCCCAGCATCGCACCCGTTCTGGAGTTGGCAGACAGCTCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAATCAGAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-23-38,23-37,23-36,23-35-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=11.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAAAGCAGAAGAGGCG
R:
GTTCTCAGTGGGCAGAGTCAG
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]