RnoALTA0042069-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15695718-15697163:-
Coord C1 exon
chr9:15697117-15697163
Coord A exon
NA
Coord C2 exon
chr9:15695718-15695868
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GTGGCCCTACCCTTCAACAGCGG
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATGCACTTACCTGATGGGAGAGCCCAGCCTGGATCTCCGGAATCAAG
Seq A exon
NA
Seq C2 exon
CGGCCAAACCAAAGGAGTGTTTGGGGAACAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAAAGCCTGCCTGCCCTGAATGGCCACATGAGGTCCCACGGGGGAATGAGGGCATCCCCCAGCCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=47.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGATCTCCGGAATCAA
R:
CTGTTTGAGGCTGGGGGATG
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]