RnoEX0004969 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98353717-98360556:-
Coord C1 exon
chr10:98360440-98360556
Coord A exon
chr10:98356379-98356574
Coord C2 exon
chr10:98353717-98353883
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTTTTGTTTTGTAGATA
3' ss Score
9.25
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATCTTTATAGGGATCTCGAGAGATGCCCCGACCTGGGAATTGAGAACTATGGCGTTTCTGTAACAACTCTGACTGAGGTCTTTCTGAAACTGGAAGGAAAATCAGCAATTGATTCAG
Seq A exon
ATATTGGTGAGACAGAAGATGTACAAGCTGGAGGGACAAGAGGCCCAGGGAGACTTGATGGGGAGCAATTTGTCTCTTTACTTAATGAGATGAGTAAGACAAAAGGGGGCATGGCTCTCTGGTGGCAGCAACTCTGTGCAGTGACCAGGCTTCGCTTCTTGAAGTTAAAGTATAGAAGGAAATCCATCGTTATTCT
Seq C2 exon
GATTCTGATTTTGGGGATTGGACTTCTGCATATTCTGTCAGCAAATGTTCACAGGTTAGTCAATCAGAGTGATTACTGTTGGGAGCTCTCTCCTCATACGTACTTCCTCACACCTGGCCAACGACCACAGATGCCCCTCACAAACTTACTGATCATCAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-18/37=17-19
Average complexity
S
Mappability confidence:
94%=95=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
C2:
PF126982=ABC2_membrane_3=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGAGAGATGCCCCGAC
R:
AGTTTGTGAGGGGCATCTGTG
Band lengths:
251-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]