RnoEX0006346 @ rn6
Exon Skipping
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66312286-66315273:-
Coord C1 exon
chr17:66315133-66315273
Coord A exon
chr17:66313807-66313987
Coord C2 exon
chr17:66312286-66312420
Length
181 bp
Sequences
Splice sites
3' ss Seq
CACTGCCCCCTGCTGTAGAGTCT
3' ss Score
-8
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGAACCGAGAAGTTGCTAGAAACAATTGACCAGCTGCACCTGGAGTTTGCCAAGAGAGCTGCGCCCTTCAACAACTGGATGGAGGGCGCCATGGAGGACCTGCAGGACATGTTCATCGTCCACAGCATTGAGGAGATCCAG
Seq A exon
TCTGATCACCGCACATGAGCAGTTCAAGGCCACGCTGCCCGAGGCCGATGGGGAGCGGCAGTCCATCCTAGCCATCCAGAATGAGGTGGAGAAGGTGATCCAGAGCTACAGTATCCGGATCAGCTCCAGCAACCCCTACAGCACTGTCACCATGGACGAGCTGCGCAACAAGTGGGACAAG
Seq C2 exon
GTGAAGCAGCTGGTGCCAGTCCGGGATCAGTCCCTGCAGGAGGAGCTGGCACGCCAACATGCTAATGAGCGCCTACGGCGCCAGTTTGCTGCCCAGGCCAATGCCATCGGCCCCTGGATCCAGAACAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833-'24-28,'24-27,25-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATTGACCAGCTGCACCT
R:
TCTTGTTCTGGATCCAGGGGC
Band lengths:
251-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]