DreEX6053754 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20108840-20110299:-
Coord C1 exon
chr17:20110159-20110299
Coord A exon
chr17:20109065-20109247
Coord C2 exon
chr17:20108840-20108974
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATTGTATGTTTTGTTTGTAGACT
3' ss Score
7.57
5' ss Seq
AAGGTCAAA
5' ss Score
1.82
Exon sequences
Seq C1 exon
AGGACAGAGAAACTTTTGGAGACGGTGGATCAGTTGTTTCTGGAATATGCAAAGAGATCTGCACCCTTTAATAACTGGATGGAAGGAGCTATGGAAGACTTGCAGGACATGTTCATTGTGCACACAATTGAGGAAGTCCAG
Seq A exon
ACTCTGATAGCTGCTCATGAGCAGTTTAAGGCCACCCTTCCTGAGGCAGATGCAGAGAGACAGGCGATCCTTGGCATTCAGCAGGAAGTCCTGAAGATCTTCCAGAGTTATGGCATCCGTGGAGATCTTACAAATCCCTACAGCACTATTACTGCAGAAGAAATTGCCATCAAATGGGACAAG
Seq C2 exon
GTGAAGAAGCTGGTGCCCCAGCGTGACAGTGCACTGCAGGAGGAGTTAGCGAGACAGCATGCTAACGAAAGACTCAGACGCCAGTTTGCTGCCCAAGCCAACCTCATCGGACCCTGGATACAGACTAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACGGTGGATCAGTTGT
R:
GTATCCAGGGTCCGATGAGGT
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]