MmuEX6057246 @ mm10
Exon Skipping
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12277399-12280569:-
Coord C1 exon
chr13:12280429-12280569
Coord A exon
chr13:12278794-12278976
Coord C2 exon
chr13:12277399-12277533
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTGCACTGCCCCCTGTAGAGT
3' ss Score
7.16
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGAACTGAGAAGTTGCTGGAAACAATCGACCAACTGCACCTGGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAG
Seq A exon
AGTCTGATCACTGCACATGAGCAGTTCAAGGCCACACTGCCCGAGGCCGACGGGGAGCGGCAGTCCATCCTGGCCATCCAGAACGAGGTGGAGAAGGTGATCCAGAGCTACAGCATCCGGATCAGCTCCAGCAACCCCTACAGCACTGTCACCATGGATGAGCTGCGCAACAAGTGGGACAAG
Seq C2 exon
GTGAAGCAGCTGGTGCCGGTCCGGGATCAGTCCCTGCAGGAGGAGCTGGCTCGCCAACATGCTAATGAGCGTCTGCGGCGCCAGTTTGCTGCTCAGGCCAATGCCATTGGGCCCTGGATCCAGAACAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-'33-21,'33-19,34-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCGACCAACTGCACCTG
R:
TCTTGTTCTGGATCCAGGGCC
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types