GgaEX1006138 @ galGal4
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36960829-36962225:-
Coord C1 exon
chr3:36962085-36962225
Coord A exon
chr3:36961515-36961697
Coord C2 exon
chr3:36960829-36960888
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCTCTGATTTTAGAGT
3' ss Score
10.8
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGGACAGAGAAATTGCTTGAAACAATCGATCAGCTTCACCTGGAGTTTGCCAAAAGAGCTGCTCCTTTCAACAACTGGATGGAAGGTGCTATGGAAGACCTACAGGACATGTTTATTGTTCATAGCATAGAGGAAATTCAG
Seq A exon
AGTTTAATCTCTGCACATGATCAATTTAAAGCTACTTTGCCAGAGGCAGATGGTGAAAGACAGGCCATACTGTCAATCCAGAATGAAGTTGAAAAAGTTATTCAAAGTTACAGCATGAGAATAAGTGCAAGCAATCCTTACAGCACTGTTACTGTGGAAGAGATTCGCACCAAGTGGGAAAAG
Seq C2 exon
GTGAAGCAGCTGGTACCTCAGAGGGATCAATCATTGCAGGAAGAACTAGCCCGCCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'31-29,'31-26,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=65.0),PF0043516=Spectrin=PU(5.0=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGAGAAATTGCTTGAAACA
R:
CGGGCTAGTTCTTCCTGCAAT
Band lengths:
194-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]