MmuEX6057246 @ mm9
Exon Skipping
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12369666-12372836:-
Coord C1 exon
chr13:12372696-12372836
Coord A exon
chr13:12371061-12371243
Coord C2 exon
chr13:12369666-12369800
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTGCACTGCCCCCTGTAGAGT
3' ss Score
7.16
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGAACTGAGAAGTTGCTGGAAACAATCGACCAACTGCACCTGGAGTTTGCCAAGAGAGCCGCGCCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTCCACAGCATCGAGGAGATCCAG
Seq A exon
AGTCTGATCACTGCACATGAGCAGTTCAAGGCCACACTGCCCGAGGCCGACGGGGAGCGGCAGTCCATCCTGGCCATCCAGAACGAGGTGGAGAAGGTGATCCAGAGCTACAGCATCCGGATCAGCTCCAGCAACCCCTACAGCACTGTCACCATGGATGAGCTGCGCAACAAGTGGGACAAG
Seq C2 exon
GTGAAGCAGCTGGTGCCGGTCCGGGATCAGTCCCTGCAGGAGGAGCTGGCTCGCCAACATGCTAATGAGCGTCTGCGGCGCCAGTTTGCTGCTCAGGCCAATGCCATTGGGCCCTGGATCCAGAACAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.021 A=0.295 C2=0.311
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCGACCAACTGCACCTG
R:
TCTTGTTCTGGATCCAGGGCC
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: