GgaEX1006138 @ galGal3
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39124312-39125783:-
Coord C1 exon
chr3:39125643-39125783
Coord A exon
chr3:39125073-39125255
Coord C2 exon
chr3:39124312-39124446
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCTCTGATTTTAGAGT
3' ss Score
10.8
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGGACAGAGAAATTGCTTGAAACAATCGATCAGCTTCACCTGGAGTTTGCCAAAAGAGCTGCTCCTTTCAACAACTGGATGGAAGGTGCTATGGAAGACCTACAGGACATGTTTATTGTTCATAGCATAGAGGAAATTCAG
Seq A exon
AGTTTAATCTCTGCACATGATCAATTTAAAGCTACTTTGCCAGAGGCAGATGGTGAAAGACAGGCCATACTGTCAATCCAGAATGAAGTTGAAAAAGTTATTCAGAGTTACAGCATGAGAATAAGTGCAAGCAATCCTTACAGCACTGTTACTGTGGAAGAGATTCGCACCAAGTGGGAAAAG
Seq C2 exon
GTGAAGCAGCTGGTACCTCAGAGGGATCAATCATTGCAGGAAGAACTAGCCCGCCAGCATGCCAATGAACGCCTGCGTCGCCAGTTTGCTGCTCAGGCCAATGTCATTGGGCCATGGATCCAGACCAAGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.262 C2=0.200
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATCAGCTTCACCTGGAGT
R:
TCTTGGTCTGGATCCATGGCC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]