BtaEX6104896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9436258-9441139:+
Coord C1 exon
chr28:9436258-9436398
Coord A exon
chr28:9438024-9438206
Coord C2 exon
chr28:9441005-9441139
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCCACTTGTCTCTGGCTTAGAGC
3' ss Score
7.23
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGAACTGAGAAATTGCTGGAAACCATCGATCAACTTCACCTGGAGTTTGCCAAGAGAGCAGCTCCTTTCAACAACTGGATGGAAGGCGCCATGGAGGATCTACAAGACATGTTCATTGTCCACAGCATTGAAGAGATCCAG
Seq A exon
AGCTTGATCACTGCCCATGAGCAGTTCAAGGCCACGCTGCCCGAGGCCGACGGCGAGCGGCAGTCCATCCTGGCCATCCAGAACGAGGTGGAGAAGGTGATCCAGAGCTACAGCATCAGGATCAGCTCAAGCAACCCCTACAGCACCGTCACCGTGGACGAGATCCGGTCCAAGTGGGACAAG
Seq C2 exon
GTGAAGCAGCTCGTGCCCATCCGGGACCAGTCACTGCAGGAGGAGCTGGCCCGCCAGCATGCCAACGAGCGTCTGCGGCGCCAGTTCGCTGCACAGGCCAATGCCATTGGGCCCTGGATCCAGAACAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696-'21-28,'21-25,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCACCTGGAGTTTGCC
R:
TCTTGTTCTGGATCCAGGGCC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]