RnoEX0022965 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82750961-82751318:+
Coord C1 exon
chr10:82750961-82751014
Coord A exon
chr10:82751098-82751142
Coord C2 exon
chr10:82751265-82751318
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGCTCTCTTCCTAGGGA
3' ss Score
11.27
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTTTCAGTGGTTTGGATGGTGCCAAAGGAGATACTGGTCCTGCTGGTCCTAAG
Seq A exon
GGAGAGCCTGGCAGTCCTGGTGAAAATGGAGCTCCCGGCCAGATG
Seq C2 exon
GGTCCCCGAGGTCTGCCTGGTGAGAGAGGTCGCCCTGGACCCCCTGGCAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'19-16,'19-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(13.3=53.3),PF0139113=Collagen=PU(8.3=33.3)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGGTTTGGATGGTGCC
R:
CACTGCCAGGGGGTCCAG
Band lengths:
103-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]