RnoEX0022989 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82756623-82757163:+
Coord C1 exon
chr10:82756623-82756676
Coord A exon
chr10:82756914-82757021
Coord C2 exon
chr10:82757110-82757163
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCATTCTCCCTCCCACCTAGGGT
3' ss Score
9.28
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAGACCGTGGTGAGCCTGGTCCCCCTGGTCCTGCTGGCTTCGCTGGCCCCCCT
Seq A exon
GGTGCTGATGGCCAACCTGGTGCGAAAGGTGAACCTGGTGATACTGGTGTGAAAGGTGACGCTGGTCCTCCTGGCCCTGCTGGTCCCGCTGGACCCCCTGGCCCCATT
Seq C2 exon
GGTAACGTTGGTGCTCCTGGACCCAAAGGTTCTCGTGGTGCTGCTGGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'68-45,'68-44,70-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(33.3=55.6),PF0139113=Collagen=PU(30.3=55.6)
C2:
PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCGTGGTGAGCCT
R:
GCAGCACCACGAGAACCTTT
Band lengths:
98-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]