RnoEX0023516 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117709462-117710041:+
Coord C1 exon
chr8:117709462-117709497
Coord A exon
chr8:117709696-117709740
Coord C2 exon
chr8:117709970-117710041
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCTCTGTCACCAGGGT
3' ss Score
10.59
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTGAAGCTGGAGAGAAAGGTGACGAGGGTGCCCCG
Seq A exon
GGTGAGCCAGGTTTGCCTGGAAAAGCAGGTGAACGCGGCCTCCGG
Seq C2 exon
GGGGCACCTGGGCCCCGGGGGCCTGTGGGTGAGAAGGGGAATGAGGGGGATCCTGGAGAAGATGGCCGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'58-55,'58-54,59-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.1=100)
A:
PF0139113=Collagen=FE(16.7=100),PF0139113=Collagen=PU(18.3=73.3)
C2:
PF0139113=Collagen=PD(3.6=12.5),PF0139113=Collagen=FE(38.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCTGGAGAGAAAGGTG
R:
ATTCCGGCCATCTTCTCCAGG
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]