GgaEX1016959 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9332909-9333284:+
Coord C1 exon
chr12:9332909-9332944
Coord A exon
chr12:9333050-9333130
Coord C2 exon
chr12:9333249-9333284
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTGACTCTTTCCCCCCCAGGGT
3' ss Score
11
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
Exon sequences
Seq C1 exon
GGCATCACTGGCCTCACTGGCAGGAGTGGCCCCAAG
Seq A exon
GGTGACGCAGGGGAGCCGGGTGAGAAGGGTGAGCCAGGCAGAGTGGGTGCACCAGGACAACCAGGGCAGCGTGGCAAGGAG
Seq C2 exon
GGTGAGCGTGGAGAGAAGGGTGATGAAGGCACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'45-49,'45-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.7=100),PF0139113=Collagen=PU(10.0=66.7)
A:
PF0139113=Collagen=PD(34.9=81.5),PF0139113=Collagen=PU(37.1=96.3)
C2:
PF0139113=Collagen=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTGGCCTCACTGG
R:
GGTGCCTTCATCACCCTTCTC
Band lengths:
68-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]