RnoEX6037784 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117709017-117709497:+
Coord C1 exon
chr8:117709017-117709052
Coord A exon
chr8:117709282-117709362
Coord C2 exon
chr8:117709462-117709497
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTGTTCCCCTGACAGGGT
3' ss Score
10.01
5' ss Seq
GATGTGAGA
5' ss Score
2.75
Exon sequences
Seq C1 exon
GGTCCCATTGGCCTCACTGGCAGGGCAGGACCCACA
Seq A exon
GGTGACTCAGGGCCTCCTGGAGAGAAGGGAGAACCTGGGCGACCTGGTTCCCCAGGACCTGTTGGCCCTCGAGGAAGAGAT
Seq C2 exon
GGTGAAGCTGGAGAGAAAGGTGACGAGGGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'56-53,'56-52,57-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.1=100)
A:
PF0139113=Collagen=FE(31.0=100)
C2:
PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCATTGGCCTCACTGG
R:
CCCTCGTCACCTTTCTCTCCA
Band lengths:
64-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]