MmuEX6069109 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108967458-108967806:+
Coord C1 exon
chr9:108967458-108967493
Coord A exon
chr9:108967605-108967685
Coord C2 exon
chr9:108967771-108967806
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGTATCCCTGACAGGGT
3' ss Score
9.38
5' ss Seq
GATGTGAGA
5' ss Score
2.75
Exon sequences
Seq C1 exon
GGTCCCATTGGCCTCACTGGAAGGGCAGGACCCACA
Seq A exon
GGTGACTCAGGGCCTCCTGGAGAGAAAGGAGAGCCTGGTCGACCTGGTTCCCCAGGACCTGTTGGCCCCCGAGGAAGAGAT
Seq C2 exon
GGTGAAGCTGGAGAGAAAGGTGACGAGGGGATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'51-66,'51-62,58-66=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATTGGCCTCACTG
R:
GGGATCCCCTCGTCACCTTTC
Band lengths:
71-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types