MmuEX6069109 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108869503-108869851:+
Coord C1 exon
chr9:108869503-108869538
Coord A exon
chr9:108869650-108869730
Coord C2 exon
chr9:108869816-108869851
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGTATCCCTGACAGGGT
3' ss Score
9.38
5' ss Seq
GATGTGAGA
5' ss Score
2.75
Exon sequences
Seq C1 exon
GGTCCCATTGGCCTCACTGGAAGGGCAGGACCCACA
Seq A exon
GGTGACTCAGGGCCTCCTGGAGAGAAAGGAGAGCCTGGTCGACCTGGTTCCCCAGGACCTGTTGGCCCCCGAGGAAGAGAT
Seq C2 exon
GGTGAAGCTGGAGAGAAAGGTGACGAGGGGATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'52-53,'52-51,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATTGGCCTCACTG
R:
GGGATCCCCTCGTCACCTTTC
Band lengths:
71-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: