BtaEX6095685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51873489-51873836:+
Coord C1 exon
chr22:51873489-51873524
Coord A exon
chr22:51873622-51873702
Coord C2 exon
chr22:51873801-51873836
Length
81 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTCCTCCTTTGCAGGGC
3' ss Score
12.39
5' ss Seq
GACGTGAGA
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGTCCCATTGGCCTCACTGGCAGAGCAGGACCCCCG
Seq A exon
GGCGACTCAGGACCCCCTGGAGAGAAGGGAGACCCTGGGCGGCCCGGTTCCCCAGGACCCGTCGGCCCCCGAGGACGAGAC
Seq C2 exon
GGTGAAGTTGGAGAGAAGGGCGATGACGGTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'50-54,'50-53,52-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATTGGCCTCACTG
R:
GTCATCGCCCTTCTCTCCAAC
Band lengths:
63-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]