RnoEX0030337 @ rn6
Exon Skipping
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57832689-57840206:+
Coord C1 exon
chr3:57832689-57832779
Coord A exon
chr3:57837627-57837686
Coord C2 exon
chr3:57840091-57840206
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTTGCCCACAACCATTTAGGAC
3' ss Score
4.02
5' ss Seq
GGGGTATTG
5' ss Score
2.65
Exon sequences
Seq C1 exon
TCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
Seq A exon
GACGCTGCACTGGGATACAGATCCATCAGCTCTTCAGCTCCACTCAGATTCCGATTTGGG
Seq C2 exon
ACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
PF115403=Dynein_IC2=PU(0.1=0.0)
C2:
PF115403=Dynein_IC2=WD(100=82.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCTCCAAGTCGGTGAG
R:
TTTCTCGAGGGGGAAAGTCGA
Band lengths:
137-197
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion decreases interaction with PAFAH1B1 and DYNC1I1, but not with NDEL1, DYNLRB1, DCTN1, DYNLT3, DCTN2, NR3C1. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]