RnoEX0045047 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58479417-58485573:+
Coord C1 exon
chr3:58479417-58479672
Coord A exon
chr3:58481937-58482068
Coord C2 exon
chr3:58485363-58485573
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTTCATTCCTTTAGGGA
3' ss Score
11.42
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ACGTGTGCGCATCGATACGAGAAACGGCAGCACGTTAACACGAAGCAGGAGTCCCGGGACATCTTCGGAAGGTGTTACGTCCTGAGTCAGAATCTCAGAATTGAAGATGATATGGATGGAGGAGACTGGAGTTTCTGTGATGGCCGATTGAGGGGCCATGAAAAATTTGGCTCTTGTCAGCAAGGAGTAGCGGCTACTTTCACTAAAGACTTTCATTACATTGTTTTTGGAGCCCCAGGGACTTACAACTGGAAAG
Seq A exon
GGATCGTTCGTGTAGAACAAAAGAATAACACTTTTTTTGACATGAACATCTTTGAAGATGGGCCCTATGAAGTTGGTGGAGAGACTGATCATGACGAAAGTCTCGTGCCCGTTCCTGCTAACAGTTATCTAG
Seq C2 exon
GCTTTTCTCTGGACTCAGGGAAGGGTATTGTTTCTAAAGATGACATCACTTTTGTATCTGGTGCTCCAAGAGCCAATCACAGTGGGGCTGTAGTTTTGCTAAAAAGAGACATGAAGTCAGCACATCTTCTCCTTGAGTATATATTTGATGGTGAAGGCCTGGCTTCTTCGTTTGGCTATGACGTGGCGGTGGTGGACCTCAATGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(6.8=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGAGCCCCAGGGACTTA
R:
CCATCTGCATTGAGGTCCACC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]