BtaEX0018495 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24168107-24173410:-
Coord C1 exon
chr2:24173155-24173410
Coord A exon
chr2:24171402-24171533
Coord C2 exon
chr2:24168107-24168317
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTACCATTTCTTTCTTTTAGGGA
3' ss Score
12.66
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ACATGTGCTCATCGATATGAAAAAAGACAACATGTTAATACGAAGCAGGAATCCCGAGACATCTTTGGAAGGTGCTACGTCCTAAGTCAGAATCTCAGGATTGAAGATGATATGGATGGAGGAGACTGGAGTTTTTGTGATGGCCGGTTGAGAGGTCATGAAAAATTTGGTTCTTGCCAGCAAGGTGTAGCAGCTACTTTTACTAAAGACTTCCATTACATTGCGTTTGGAGCCCCAGGCACTTACAACTGGAAAG
Seq A exon
GGATTGTTCGTGTAGAGCAAAAGAATAACACTTTTTTTGACATGAACATCTTTGAAGATGGGCCTTATGAAGTTGGTGGAGAGACTGACCATGATGAAAGTCTAGTTCCTGTTCCTGCTAACAGTTATTTAG
Seq C2 exon
GCTTTTCTTTGGACTCGGGGAAAGGTATTGTTTCCAAAGATGAGATCACTTTCGTGTCTGGTGCTCCTAGAGCCAATCATAGTGGAGCGGTGGTTTTGCTTAAAAGAGACCTGAAGTCTGCGCACCTTCTCCCTGAGCACATATTTGATGGGGAAGGGCTGGCTTCTTCATTTGGCTATGACGTAGCAGTGGTGGACCTCAACAAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'6-5,'6-3,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(6.8=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAAGGTGTAGCAGCTAC
R:
CCAAATGAAGAAGCCAGCCCT
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development