GgaEX0013771 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17228955-17233381:-
Coord C1 exon
chr7:17233126-17233381
Coord A exon
chr7:17231489-17231620
Coord C2 exon
chr7:17228955-17229165
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTCACTTCTTCAGGGG
3' ss Score
9.67
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ACATGTGCACATCGCTATGAGAAAAGGCAATATGTAAACACAGTGCAGGAAACCCGGGATATCATTGGAAGGTGCTACGTGCTGAGCCAGGATCTCACTATTAAGGATGATATGGATAATGGAGTATGGAGTTTTTGTGATGGCCGCTTAAGAGGCCATGAGAAGTTTGGTTCCTGTCAGCAAGGTGTTGCTGCTACTTTTACTAGAGACTATCATTACATTGTGTTTGGTGCCCCAGGCACTTACAATTGGAAAG
Seq A exon
GGGTGGTTCGTGCAGAGCAAAAGAATCAGACATTTTATGATCTGGGTATCTTTGATGATGGGCCTTACGAAGTTGGTGATGAGAGCCGCCAAGATAAGAATCTAGTTCCTGTTCCAGCTAACAGTTATTTAG
Seq C2 exon
GTTTCTCTTTGGATTCTGGTAAAGGAATTGTCTCCCAAGATGAGATGACTTTTGTGTCTGGTGCACCAAGGGCCAACCATAGTGGAGCAGTTGTTTTACTGAAAAAGGAGAAAAATCAGAGAGCGCTTTCACTGGAGCACATGTTCGAAGGAGAAGGGCTGGCCTCTTCTTTTGGTTATGATGTGGCCGTTGTGGATCTGAACAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(6.8=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTGTGTTTGGTGCCCCA
R:
ACTGTTCAGATCCACAACGGC
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]