GgaEX0013771 @ galGal3
Exon Skipping
Gene
ENSGALG00000009362 | ITA6_CHICK
Description
NA
Coordinates
chr7:19107146-19111567:-
Coord C1 exon
chr7:19111312-19111567
Coord A exon
chr7:19109676-19109807
Coord C2 exon
chr7:19107146-19107356
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTCACTTCTTCAGGGG
3' ss Score
9.67
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ACATGTGCACATCGCTATGAGAAAAGGCAGTATGTAAACACAGTGCAGGAAACCCGGGATATCATTGGAAGGTGCTACGTGCTGAGCCAGGATCTCACTATTAAGGATGATATGGATAATGGAGTATGGAGTTTTTGTGATGGCCGCTTAAGAGGCCATGAGAAGTTTGGTTCCTGTCAGCAAGGTGTTGCTGCTACTTTTACTAGAGACTATCATTACATTGTGTTTGGTGCCCCAGGCACTTACAATTGGAAAG
Seq A exon
GGGTGGTTCGTGCAGAGCAAAAGAATCAGACATTTTATGATCTGGGTATCTTTGATGATGGGCCTTACGAAGTTGGTGATGAGAGCCGCCAAGATAAGAATCTAGTTCCTGTTCCAGCTAACAGTTATTTAG
Seq C2 exon
GTTTCTCTTTGGATTCTGGTAAAGGAATTGTCTCCCAAGATGAGATGACTTTTGTGTCTGGTGCACCAAGGGCCAACCATAGTGGAGCAGTTGTTTTACTGAAAAAGGAGAAAAATCAGAGAGCGCTTTCACTGGAGCACATGTTCGAAGGAGAAGGGCTGGCCTCTTCTTTTGGTTATGATGTGGCCGTTGTGGATCTGAACAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'4-11,'4-9,5-11
Average complexity
S
Mappability confidence:
78%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(6.7=7.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTGTGTTTGGTGCCCCA
R:
ACTGTTCAGATCCACAACGGC
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]