DreEX0040094 @ danRer10
Exon Skipping
Gene
ENSDARG00000069946 | itga6b
Description
integrin, alpha 6b [Source:ZFIN;Acc:ZDB-GENE-050320-5]
Coordinates
chr1:30232585-30237595:+
Coord C1 exon
chr1:30232585-30232846
Coord A exon
chr1:30234436-30234567
Coord C2 exon
chr1:30237382-30237595
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACCGGTGTGTGGAAATCAGGAA
3' ss Score
3.47
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCTGTGCACATCGATACCAGCGGCGCTTATTTGTTGGCTCAGTTCAGGAACTGCGTGACTTGACAGGTCGGTGCTATGTACTTAGTGAGGATGTGACGATTAATGAGATCTCAGATGAAGATGGAGGGGATTGGATGTTCTGCAATGGGAGAAACAGAGGGCACGAGCGGTTTGGATCATGCCAGCAGGGCATGTCCGCCACATTCACAAAGGACTATCACTATCTGGTGTTTGGAGCACCAGGCGCTTACAACTGGAAAG
Seq A exon
GAATTGTGCGGTTGGAGCAGAAGAACACCTCTCTGTTTGATAAGGATATCTTTGATGACGGCCCATATGAAGTTGGAGATGAAAACCGACTTGATGCAGAACTGGTCCCTGTTCCTGCTAACAGTTATTTAG
Seq C2 exon
GTTTCTCTTTGGATTCTGGAAAAATGCTGACTAAGAGAGGTCAGTTGACCATAGTTGCTGGGGCTCCAAGAGCCAATCACAGTGGGGCAGTTGTGCTTTTAAAGAAGGATGAGGCTAAATCCTCCTTGTTGACGGCTGAGTACACCCTAGAGGGTAGTGGACTTGCCTCTTCCTTTGGTTATGACCTTGCAGTGCTTGACATCAATGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069946_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(25.0=31.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCCACATTCACAAAGGAC
R:
ACCAAAGGAAGAGGCAAGTCC
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]