RnoEX0046058 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3127618-3159144:-
Coord C1 exon
chr9:3159038-3159144
Coord A exon
chr9:3156748-3156824
Coord C2 exon
chr9:3127618-3128689
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTGTCGCTTTTCAGAAT
3' ss Score
11.51
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GATTGTCGATGGAATTGAAGATGGCAACAGCAGTGAGGAAACTCAGACTTTTGATTTTGGCTCTGAACAAATCAGGCCAGAGCCCAGGATTTCCCCTTCCCTTGGAG
Seq A exon
AATCAGAGATTGGAGCTGCGTTTCTGTTCATCAAGGCTGAAGAAACCAAGCAGCAGATAAACAAGCTCAACAGTGAG
Seq C2 exon
GTCACAACATTGACTCAGGAGGTCTCCCAGCTAGGGAAAGATATGAGAAGCATCATGCAACTTCTGGAAAACATCTTGTCACCTCAGCAGCCATCACAATTTTGTTCTCTGCATCCCACTTCAATCTGTCCTTCCAGAGAAAGTTTCCAGACTAGGGTGAGCTGGAGTGCTCACCAGCCTTGCCTACACTTGCAGGCAAATGGAGCACATCTTTACCATGGCAATGTCACCTCTGACATCTGGAGTGTCGACCCCTCCTTGGTGGGCAGCAACCCTCAACGAACTGAAGCTCATGAGCAAAGTCCAGTAGATAGTGAACTGCATCATTCTCCAAACCTGGCTTATTCCCCCTCTCACTGCCAGGTTATCCAAGAAGGCCACTTGCAGTTCCTAAGGTGCATCTCCCCTCATTCAGATACCACACTGACACCTTTGCAGTCCATCTCAGCCACTCTCTCATCCTCTGTGTGCTCCTCATCAGAAACATCCTTGCACCTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.231 C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGCAGTGAGGAAAC
R:
GGCTGCTGAGGTGACAAGATG
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]