HsaEX6054690 @ hg38
Exon Skipping
Gene
ENSG00000183960 | KCNH8
Description
potassium voltage-gated channel subfamily H member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr3:19515322-19535646:+
Coord C1 exon
chr3:19515322-19515428
Coord A exon
chr3:19517998-19518074
Coord C2 exon
chr3:19533395-19535646
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTATGTGTGTCACTTTTCAGATC
3' ss Score
10.61
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GATTGTTGATGGAATTGAAGATGGAAACAGCAGTGAAGAAAGTCAGACTTTTGATTTTGGCTCTGAACGAATCAGATCAGAGCCCAGAATTTCTCCTCCTCTTGGAG
Seq A exon
ATCCAGAGATTGGAGCTGCTGTTCTCTTCATCAAAGCAGAGGAGACCAAGCAGCAGATAAACAAACTCAACAGTGAG
Seq C2 exon
GTAACAACATTGACTCAGGAAGTTTCTCAGTTGGGTAAAGACATGAGAAATGTGATCCAGCTTCTGGAAAACGTTCTGTCACCTCAGCAGCCATCACGGTTTTGCTCTTTGCACAGCACCTCTGTGTGTCCCTCCAGGGAGAGCTTACAGACCAGAACGAGCTGGAGTGCACACCAGCCTTGCCTACACTTGCAAACAGGCGGGGCTGCTTATACCCAAGCACAACTTTGTAGCAGTAATATCACCTCAGACATTTGGAGTGTGGATCCCTCCTCTGTGGGGAGCAGCCCCCAACGAACTGGAGCTCATGAGCAAAATCCTGCAGACAGTGAACTTTATCATTCTCCAAGCCTTGATTATTCACCTTCCCACTACCAGGTTGTCCAAGAAGGTCATTTGCAATTTTTAAGGTGCATCTCTCCACATTCAGATTCTACGTTGACGCCTCTGCAGTCCATTTCAGCAACTCTCTCATCTTCTGTCTGCTCCTCTTCGGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183960-'35-46,'35-43,36-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.308 C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGAATTTCTCCTCCTCT
R:
TGGTCTGTAAGCTCTCCCTGG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains