DreEX0040904 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:21041806-21061208:+
Coord C1 exon
chr19:21041806-21041921
Coord A exon
chr19:21045734-21045789
Coord C2 exon
chr19:21060134-21061208
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTCTGTGCAGAAT
3' ss Score
11.47
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGTCGTGGACGGCACGGAGGACAGTGATGGCACAGAAAACTCCCACACGTTCATATTTTCCTCTGCTCATCAGCACAGCGTCAGTGGTGCGACCAACACCACTGCCACCACAGCAG
Seq A exon
AATTAGCTGCTAAATCGGAGGACACCCGAGGACAGCTACGCCATCTTAACCAAGAG
Seq C2 exon
GTGAGTTCCCTGGGACGAGAGGTGGCTGAACTGGGACGAGTCATGCGGAGTCTTGCCTTTCTCATCGAATCCATGATGGCTTCACCACAAACACCAGGTGTCTACACATCCACCTTTACCTCGGGACATCCCTCTCCTCCCGTCCCCTTCCAAGGCCAGGGCTCATCCTGGTCCAGCCCAAATTTTCCTTCGCCGATGCACCCCGGAATACATCCTGGAGGCCTTATATCGCTTCCACTCAGACCACAAGAACTACAGGTGCTCTGCCCAACCACATCTCCGGGTTCCTTTCCCATTGCACTTTCCACAACACCACATATGGACAGATTCAGACAGCCGTTACTGACCCTTTCTCCACACAGTGCAGTCGCCCGGACCCGCTCGCAAAGCCTGGAGACACCTCATCCACAACATCACCAACACATCCCACATGCCCCTGGAACTTTACCCCGAGTGGGACAGCCATCGCTGGGAGAAGGGGAGGATCTCAGGTCCCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'19-14,'19-13,20-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGAAAACTCCCACAC
R:
CATGACTCGTCCCAGTTCAGC
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]