BtaEX0018834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012798 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr1:138644447-138676649:+
Coord C1 exon
chr1:138644447-138644553
Coord A exon
chr1:138646871-138646947
Coord C2 exon
chr1:138675951-138676649
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTCACTTTCCAGACC
3' ss Score
9.96
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GATTGTTGATGGAATTGAAGATGGAAACAGCAGTGAAGAAAGCCAGACTTTTGACTTTGGCTCTGACCGAGTCAGACCGGAGCCCAGAATTTCTCCTCCTCCTGGAG
Seq A exon
ACCCAGAGATTGGAGCTGCTGTCCTCTTTATCAAAGCGGAGGAGACCAAGCAGCAGATAAACAAACTCAACAGTGAG
Seq C2 exon
GTAACCACGCTGACTCAGGAGGTCTCCCAGCTCGGCAGGGACATGAAGACGGTGATGCAGCTTCTTGAGCACGTCCTGTCGCCGCAGCAGCAGTCCCGGCTTTGCTCTCTGCACACCGCCTCTCTGCGTCCCTCCGGTTTCCAGGGCGGGATGACCTGGAGCACACACCAGCCCTGTCTACACTTGCAAGCCGCCGGCGCCACCTACACCCCAGCCCAGCTCTGCCAGGGGAGTGTCACCCCCGACAGATGGAGTGTGGGGCCCTCTTCGGCGGGGGGCAGCCCCCAGCGGGTGGGAGCCCAGGAGCAGAGTCCTGCGGGCCGGGAGCTCCGCGCCTCCCCGAGCCTGGATCACGCGCCTGCCCACTGCCAGCTGGTCCAGGAAGGTCGCCTGCAGCTCCTCAGGTGCGTCTCCCCGCAGTCGGACACGACGCTGACGCCGCTGCAGTCCATCTCGGCCACCCTCTCCTCCTCCGTCTGCTCCTCCTCAGAGACGTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012798-'21-27,'21-25,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.577 C2=0.487
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTGGCTCTGACCGAGT
R:
CAGAGAGCAAAGCCGGGACT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development