MmuEX6078354 @ mm9
Exon Skipping
Gene
ENSMUSG00000073383 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:53093281-53112263:-
Coord C1 exon
chr17:53112157-53112263
Coord A exon
chr17:53109785-53109861
Coord C2 exon
chr17:53093281-53094037
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTGTCACTTTTCAGAAT
3' ss Score
10.8
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GATTGTTGATGGAATTGAAGATGGTAACAGCAATGAGGAAACTCAGACTTTTGACTTTGGCTCTGAACAGATCAGGCCAGAGCCCAGGATTTCCCCTCCCCTTGCAG
Seq A exon
AATCCGAGATCGGAGCTGCGTTTCTGTTCATCAAGGCTGAAGAAACCAAGCAGCAGATTAACAAGCTCAACAGTGAG
Seq C2 exon
GTCACAACATTAACTCAGGAGGTTTCCCAGCTAGGGAGAGATATGAGAAGCATCATGCAACTTCTGGAAAACATCTTGTCACCTCAGCAGCCATCCCAGTTTTGTTCTCTACATCCCACCCCAATGTGTCCTTCCAGAGAAAGTTTACAGACTAGGGTGAGTTGGAGTGCTCACCAGCCTTGCCTACATTTGCAGGCAGGTGGAGCACATCTTTACCATGGTAATGTCGCCTCTGGTATCTGGAGTGTTGATCCATCCTTGGTGGGCAGCAGCCCTCAACGAACTGAAGCTCACGAGCAAAACCCAGCAGACAGTGAACTTCATCATTCTCCAAACCTGGATTATTCTCCATCCCACTGCCAGGTTATCCAAGAAGGCCACTTGCAGTTCCTGAGGTGCATCTCCCCCCATTCAGATACCACACTGACACCTTTGCAGTCCATCTCTGCCACTCTCTCATCTTCTGTGTGCTCCTCATCAGAAACATCCTTGCACCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073383-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCAGGATTTCCCCTC
R:
TCTGGAAGGACACATTGGGGT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: