GgaEX6019351 @ galGal3
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35642388-35650436:+
Coord C1 exon
chr2:35642388-35642494
Coord A exon
chr2:35643512-35643588
Coord C2 exon
chr2:35649726-35650436
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACATGTATTTGAATTTTCAGAGG
3' ss Score
6.85
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATTGTTGATGGGACTGAAGATGGAAATCATACTGAGGAAAGTCAAACCTTTGACTTCAGTTCTGATCAGCTCCGGCAGGAATCCAGAGCATCTCCAACAATTGGAG
Seq A exon
AGGCAGAAATTGGTGCTGCAGTGCTTGTTATCAAAGCAGAAGAGACCAAACAACAAATCAGCAGGCTTAATAATGAG
Seq C2 exon
GTCACAAATTTAACTCAAGAAGTATCACAATTAAGTAAGGATATGAAGAATGTGATATACCTTCTAGAGAACCTCCTCCCATCCCAGAAGCCATCAGGATTCTGCACAGTGCATGGCATATCTCGGAGTCCCACCCTGGAAAGCCTGCAGGCTCAGATGGCTTGGACTACACGACAGCCTTGCACACACATGCAAGCTGGGAACATTACTTGCACCAAAGCACAACCTTGCCGCAGTAACACATTATGTGACATCTGGAATACAGATCTATCCTCTGTAGGCAGCAGCCCCCAAAGAACTGAACATAACCTTCAAAATTCTACAGACAGTGAATTTTTCTATACATCAGGCCTTCATAACTCACCTTCCCAGTATCAGGTAATTCAGAAAGATAATTTTCAATTTTTAAGATGCACCTCTCCCCATTCAGACACTACCTTGACTCCTCTTCAGTCTATTTCAGCAACTCTTTCTTCTTCAGTATGCTCTTCATCAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.231 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAATCCAGAGCATCTC
R:
GTGGGACTCCGAGATATGCCA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]