MmuEX6078354 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52959397-52979194:+
Coord C1 exon
chr17:52959397-52959503
Coord A exon
chr17:52961799-52961875
Coord C2 exon
chr17:52977623-52979194
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTGTCACTTTTCAGAAT
3' ss Score
10.8
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GATTGTTGATGGAATTGAAGATGGTAACAGCAATGAGGAAACTCAGACTTTTGACTTTGGCTCTGAACAGATCAGGCCAGAGCCCAGGATTTCCCCTCCCCTTGCAG
Seq A exon
AATCCGAGATCGGAGCTGCGTTTCTGTTCATCAAGGCTGAAGAAACCAAGCAGCAGATTAACAAGCTCAACAGTGAG
Seq C2 exon
GTCACAACATTAACTCAGGAGGTTTCCCAGCTAGGGAGAGATATGAGAAGCATCATGCAACTTCTGGAAAACATCTTGTCACCTCAGCAGCCATCCCAGTTTTGTTCTCTACATCCCACCCCAATGTGTCCTTCCAGAGAAAGTTTACAGACTAGGGTGAGTTGGAGTGCTCACCAGCCTTGCCTACATTTGCAGGCAGGTGGAGCACATCTTTACCATGGTAATGTCGCCTCTGGTATCTGGAGTGTTGATCCATCCTTGGTGGGCAGCAGCCCTCAACGAACTGAAGCTCACGAGCAAAACCCAGCAGACAGTGAACTTCATCATTCTCCAAACCTGGATTATTCTCCATCCCACTGCCAGGTTATCCAAGAAGGCCACTTGCAGTTCCTGAGGTGCATCTCCCCCCATTCAGATACCACACTGACACCTTTGCAGTCCATCTCTGCCACTCTCTCATCTTCTGTGTGCTCCTCATCAGAAACATCCTTGCACCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'6-20,'6-18,17-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.231 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCAGGATTTCCCCTC
R:
TCTGGAAGGACACATTGGGGT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types