RnoEX0063606 @ rn6
Exon Skipping
Gene
ENSRNOG00000018739 | Pax7
Description
paired box 7 [Source:RGD Symbol;Acc:1564360]
Coordinates
chr5:158214616-158254973:-
Coord C1 exon
chr5:158254771-158254973
Coord A exon
chr5:158223876-158224122
Coord C2 exon
chr5:158214616-158214731
Length
247 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCATCTCTCCCGCAGGTG
3' ss Score
12.9
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGGGGCAGCACAGTACACAGGCCCCAGCCCCTTCCGCCATCAACCATGCATCAGGGTGGGCTGGCTGCGGCCGCTGCAGCAGCTGACAGCAGCTCTGCCTACGGAGCCCGCCACAGCTTCTCCAGCTACTCGGACAGCTTCATGAACCCCGGGGCCCCCTCCAACCACATGAACCCCGTCAGCAATGGCCTGTCTCCTCAG
Seq A exon
GTGATGAGCATTCTCAGCAACCCGAGTGCTGTGCCTCCACAGCCCCAGGCCGACTTCTCCATCTCCCCGCTGCATGGAGGTCTGGACTCTGCCTCCTCCATCTCAGCCAGTTGCAGCCAGCGGGCCGACTCCATCAAGCCAGGAGACAGCTTGCCCACCTCCCAGTCTTACTGCCCACCCACCTACAGCACCACGGGCTACAGTGTGGACCCTGTGGCTGGTTACCAGTACAGCCAGTACGGTCAAA
Seq C2 exon
CTGCTGTTGATTACCTGGCCAAAAACGTGAGCCTGTCTACACAGCGCCGTATGAAGCTCGGGGAACACTCCGCGGTGCTGGGACTTCTTCCTGTGGAGACGGGACAAGCCTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018739-'6-11,'6-9,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123603=Pax7=WD(100=61.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGGCAGCACAGTACA
R:
TCCCGTCTCCACAGGAAGAAG
Band lengths:
307-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]